C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: leucine rich repeat and sterile alpha motif containing 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000113200 Lrsam1-001 ENSMUSG00000026792 10090 - 2:32925220-32961614 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainHeartKidneyLiverTestisENSMUST00000113200
Transcript ID Adipose Brain Heart Kidney Liver Testis
ENSMUST00000113200 8.135±0.29 6.561±2.34 4.381±0.35 6.066±0.78 4.800±0.02 3.382±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008YA CIL_0008YA_0002 VISTA 2:32608279-33209524
CIL_0000HA CIL_0000HA_0002 CGP 2:32787602-32925254
CIL_0002XQ CIL_0002XQ_0002 CGP 2:32925216-32964496

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000209 ISS protein polyubiquitination
GO:0004842 ISS ubiquitin-protein transferase activity
GO:0005737 ISS cytoplasm
GO:0008270 IEA zinc ion binding
GO:0016020 ISS membrane
GO:0016874 IEA ligase activity
GO:0030163 ISS protein catabolic process
GO:0045806 ISS negative regulation of endocytosis
GO:0046755 ISS viral budding
GO:0051865 ISS protein autoubiquitination
GO:0070086 ISS ubiquitin-dependent endocytosis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000300417 LRSAM1-201 protein_coding Homo_sapiens 0 2333
ENST00000323301 LRSAM1-004 protein_coding Homo_sapiens 0 2333
ENST00000373322 LRSAM1-006 protein_coding Homo_sapiens 0 2333
ENST00000373324 LRSAM1-003 protein_coding Homo_sapiens 0 1563
ENST00000472068 LRSAM1-012 processed_transcript Homo_sapiens 0 676
ENST00000483302 LRSAM1-008 processed_transcript Homo_sapiens 0 1467
ENST00000485704 LRSAM1-007 processed_transcript Homo_sapiens 0 217

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