C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SH2 domain containing 3C
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000113242 Sh2d3c-002 ENSMUSG00000059013 10090 + 2:32727706-32755512 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000113242
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000113242 7.685±4.08 10.204±1.21 1.282±0.28 6.066±6.06 6.593±2.54 3.199±0.49 4.911±0.33 5.437±1.71 1.385±0.56 23.687±9.09 2.628±0.59 5.701±2.33 2.225±0.72 0.465±0.27

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008YA CIL_0008YA_0002 VISTA 2:32608279-33209524

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005068 TAS transmembrane receptor protein tyrosine kinase adaptor activity
GO:0005085 IEA guanyl-nucleotide exchange factor activity
GO:0005737 IEA cytoplasm
GO:0007165 TAS signal transduction
GO:0007169 TAS transmembrane receptor protein tyrosine kinase signaling pathway
GO:0007264 IEA small GTPase mediated signal transduction
GO:0016020 IEA membrane
GO:0043547 IEA positive regulation of GTPase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000029457 sh2d3ca-201 protein_coding Danio_rerio 0 278
ENSDART00000144214 sh2d3ca-001 protein_coding Danio_rerio 0 278
ENST00000314830 SH2D3C-004 protein_coding Homo_sapiens 0 2700
ENST00000373276 SH2D3C-201 protein_coding Homo_sapiens 0 2699
ENST00000373277 SH2D3C-007 protein_coding Homo_sapiens 0 2739
ENST00000414380 SH2D3C-010 protein_coding Homo_sapiens 0 725
ENST00000420366 SH2D3C-008 protein_coding Homo_sapiens 0 2678
ENST00000429553 SH2D3C-202 protein_coding Homo_sapiens 0 2699
ENST00000440630 SH2D3C-002 protein_coding Homo_sapiens 0 1057
ENST00000464239 SH2D3C-005 processed_transcript Homo_sapiens 0 937
ENST00000468969 SH2D3C-009 processed_transcript Homo_sapiens 0 658
ENST00000471939 SH2D3C-001 processed_transcript Homo_sapiens 0 715
ENST00000484160 SH2D3C-011 processed_transcript Homo_sapiens 0 398
ENST00000488685 SH2D3C-003 processed_transcript Homo_sapiens 0 881

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