C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cleavage stimulation factor, 3' pre-RNA subunit 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000113286 Cstf2-007 ENSMUSG00000031256 10090 + X:134059215-134075863 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonHeartLiverMuscleOvaryTestisENSMUST00000113286
Transcript ID Adipose Adrenal Breast Colon Heart Liver Muscle Ovary Testis
ENSMUST00000113286 1.968±0.35 2.301±0.04 1.776±0.40 2.546±0.41 0.727±0.11 1.719±1.03 0.523±0.05 3.846±0.79 7.450±3.17

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007BC CIL_0007BC_0002 CGP X:133936385-134086819
CIL_0000YO CIL_0000YO_0003 CGP X:134059187-134221956

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0005847 ISS mRNA cleavage and polyadenylation specificity factor complex
GO:0006397 IEA mRNA processing
GO:0071920 ISS cleavage body

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000372972 CSTF2-001 protein_coding Homo_sapiens 0 1860
ENST00000413437 CSTF2-004 protein_coding Homo_sapiens 0 931
ENST00000415585 CSTF2-201 protein_coding Homo_sapiens 0 1236
ENST00000475126 CSTF2-003 nonsense_mediated_decay Homo_sapiens 0 1003

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