C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: protocadherin 11 X-linked
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000113358 Pcdh11x-001 ENSMUSG00000034755 10090 + X:120290259-120910619 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastHeartLiverMuscleOvaryPlacentaTestisENSMUST00000113358
Transcript ID Adipose Bladder Brain Breast Heart Liver Muscle Ovary Placenta Testis
ENSMUST00000113358 0.021±0.00 0.011±0.00 0.835±0.28 0.015±0.00 0.012±0.00 0.008±0.00 0.005±0.00 0.062±0.05 0.003±0.00 0.013±0.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007B8 CIL_0007B8_0002 CGP X:119927196-120910619

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005515 IPI protein binding
GO:0005886 IEA plasma membrane
GO:0007156 IEA homophilic cell adhesion via plasma membrane adhesion molecules
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000215473 PCDH11Y-005 protein_coding Homo_sapiens 0 3232
ENST00000298274 PCDH11X-005 processed_transcript Homo_sapiens 0 3273
ENST00000333703 PCDH11Y-002 protein_coding Homo_sapiens 0 3236
ENST00000361655 PCDH11X-007 protein_coding Homo_sapiens 0 3746
ENST00000361724 PCDH11X-004 retained_intron Homo_sapiens 0 3269
ENST00000362095 PCDH11Y-003 protein_coding Homo_sapiens 0 3236
ENST00000373088 PCDH11X-003 protein_coding Homo_sapiens 0 3260
ENST00000373094 PCDH11X-001 protein_coding Homo_sapiens 0 3336
ENST00000373097 PCDH11X-002 protein_coding Homo_sapiens 0 3644
ENST00000395337 PCDH11X-201 protein_coding Homo_sapiens 0 3269
ENST00000400457 PCDH11Y-001 protein_coding Homo_sapiens 0 3232
ENST00000406881 PCDH11X-008 protein_coding Homo_sapiens 0 3326
ENST00000504220 PCDH11X-006 protein_coding Homo_sapiens 0 3326
ENST00000620615 PCDH11Y-006 processed_transcript Homo_sapiens 0 198
ENST00000621505 PCDH11Y-007 protein_coding Homo_sapiens 0 198
ENST00000622698 PCDH11Y-004 protein_coding Homo_sapiens 0 3236
ENST00000623574 PCDH11Y-201 protein_coding Homo_sapiens 0 3236
ENST00000624742 PCDH11Y-202 protein_coding Homo_sapiens 0 3236
ENST00000624977 PCDH11Y-201 protein_coding Homo_sapiens 0 3232

Loading