C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: FYVE, RhoGEF and PH domain containing 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000113466 Fgd5-201 ENSMUSG00000034037 10090 + 6:91987110-92076004 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastLiverMuscleOvaryPlacentaTestisENSMUST00000113466
Transcript ID Brain Breast Liver Muscle Ovary Placenta Testis
ENSMUST00000113466 0.351±0.00 0.440±0.00 0.227±0.00 0.955±0.32 2.980±1.41 0.222±0.00 0.106±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007GJ CIL_0007GJ_0002 CGP 6:91914759-92076004
CIL_0005AG CIL_0005AG_0002 CGP 6:91978878-92173057

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005089 IEA Rho guanyl-nucleotide exchange factor activity
GO:0005515 IEA protein binding
GO:0005575 ND cellular_component
GO:0008150 ND biological_process
GO:0032321 IEA positive regulation of Rho GTPase activity
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000253144 ZNF331-008 protein_coding Homo_sapiens 0.000007 58
ENST00000282018 CYSLTR2-001 protein_coding Homo_sapiens 0.0000005 62
ENST00000285046 FGD5-001 protein_coding Homo_sapiens 0 2634
ENST00000411977 ZNF331-004 protein_coding Homo_sapiens 0.000003 58
ENST00000449416 ZNF331-201 protein_coding Homo_sapiens 0.000005 58
ENST00000457774 FGD5-005 protein_coding Homo_sapiens 0 289
ENST00000468662 FGD5-002 processed_transcript Homo_sapiens 0 1572
ENST00000476851 FGD5-003 processed_transcript Homo_sapiens 0 1565
ENST00000511154 ZNF331-001 protein_coding Homo_sapiens 0.000003 58
ENST00000511593 ZNF331-022 protein_coding Homo_sapiens 0.000003 58
ENST00000512387 ZNF331-007 protein_coding Homo_sapiens 0.000003 58
ENST00000513999 ZNF331-002 protein_coding Homo_sapiens 0.000003 58
ENST00000532880 TPRXL-004 protein_coding Homo_sapiens 1.4013e-45 187
ENST00000543456 ADIPOR2-008 processed_transcript Homo_sapiens 0.00000001 64
ENST00000543601 FGD5-201 protein_coding Homo_sapiens 0 2263
ENST00000614866 FGD5P1-001 transcribed_unprocessed_pseudogene Homo_sapiens 0 477

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