C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RNA binding motif protein 47
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000113724 Rbm47-002 ENSMUSG00000070780 10090 - 5:66018616-66081000 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderColonKidneyLiverLungOvaryPlacentaENSMUST00000113724
Transcript ID Bladder Colon Kidney Liver Lung Ovary Placenta
ENSMUST00000113724 2.500±0.00 45.068±6.63 26.578±7.30 5.934±5.02 3.387±0.00 9.213±3.38 8.108±0.84

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00038Q CIL_00038Q_0002 CGP 5:66016549-66298016

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0002244 IMP hematopoietic progenitor cell differentiation
GO:0005575 ND cellular_component
GO:0005634 IEA nucleus

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000110698 rbm46-001 protein_coding Danio_rerio 0 231
ENST00000295971 RBM47-006 protein_coding Homo_sapiens 0 2359
ENST00000381793 RBM47-001 protein_coding Homo_sapiens 0 2399
ENST00000381795 RBM47-002 protein_coding Homo_sapiens 0 1439
ENST00000505220 RBM47-010 protein_coding Homo_sapiens 0 265
ENST00000505414 RBM47-009 protein_coding Homo_sapiens 0 625
ENST00000507180 RBM47-014 protein_coding Homo_sapiens 0 507
ENST00000510871 RBM47-007 nonsense_mediated_decay Homo_sapiens 0 1437
ENST00000511598 RBM47-008 protein_coding Homo_sapiens 0 460
ENST00000511902 RBM47-012 protein_coding Homo_sapiens 0 270
ENST00000513473 RBM47-015 protein_coding Homo_sapiens 0 702
ENST00000514014 RBM47-005 protein_coding Homo_sapiens 0 2170
ENST00000514782 RBM47-013 protein_coding Homo_sapiens 0 553
ENST00000515053 RBM47-011 protein_coding Homo_sapiens 0 826

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