C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: paroxysmal nonkinesiogenic dyskinesia
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000113805 Pnkd-003 ENSMUSG00000026179 10090 + 1:74284930-74287454 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000113805
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000113805 31.617±8.13 40.035±5.98 22.749±2.09 14.663±0.00 23.503±2.65 27.794±3.12 35.823±6.78 59.783±7.98 21.365±5.05 19.105±0.75 22.354±2.66 21.764±3.72 16.148±5.89 34.401±15.46

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007WL CIL_0007WL_0002 VISTA 1:73730234-74332407
CIL_0005VJ CIL_0005VJ_0002 CGP 1:74279840-74353694
CIL_0005VI CIL_0005VI_0002 CGP 1:74284930-74353694

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0004416 IEA hydroxyacylglutathione hydrolase activity
GO:0005634 IEA nucleus
GO:0005739 IDA mitochondrion
GO:0006750 IEA glutathione biosynthetic process
GO:0008270 IEA zinc ion binding
GO:0016020 ISO membrane
GO:0032225 IMP regulation of synaptic transmission, dopaminergic
GO:0042053 IMP regulation of dopamine metabolic process
GO:0050884 IMP neuromuscular process controlling posture

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000248451 PNKD-003 protein_coding Homo_sapiens 0 761
ENST00000273077 PNKD-001 protein_coding Homo_sapiens 0 387
ENST00000435914 PNKDP1-001 processed_pseudogene Homo_sapiens 0 466
ENST00000469689 PNKD-004 retained_intron Homo_sapiens 0 448
ENST00000472650 PNKD-005 processed_transcript Homo_sapiens 0 198

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