C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: bromodomain containing 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000113941 Brd3-201 ENSMUSG00000026918 10090 - 2:27445600-27475673 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastHeartLungMuscleTestisENSMUST00000113941
Transcript ID Adipose Brain Breast Heart Lung Muscle Testis
ENSMUST00000113941 1.291±0.07 2.740±0.00 1.332±0.00 1.257±0.00 2.062±0.03 1.059±0.40 7.127±2.03

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00014Z CIL_00014Z_0002 CGP 2:27262104-27507662
CIL_000150 CIL_000150_0002 CGP 2:27445579-27536535

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003682 IEA chromatin binding
GO:0005575 ND cellular_component
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006357 IEA regulation of transcription from RNA polymerase II promoter
GO:0016568 IEA chromatin modification
GO:0070577 IEA lysine-acetylated histone binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000303407 BRD3-001 protein_coding Homo_sapiens 0 1788
ENST00000371834 BRD3-002 protein_coding Homo_sapiens 0 1722
ENST00000473349 BRD3-003 processed_transcript Homo_sapiens 0 737
ENST00000494743 BRD3-006 retained_intron Homo_sapiens 0 494

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