C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Son DNA binding protein
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000114036 Son-002 ENSMUSG00000022961 10090 + 16:91647880-91664033 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonKidneyLiverLungOvaryPlacentaTestisENSMUST00000114036
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000114036 11.739±3.96 66.721±8.88 7.606±0.00 13.490±0.03 23.601±4.51 12.744±2.30 6.985±0.49 9.721±4.18 17.809±2.92 49.280±17.98 11.238±2.23 10.650±0.68

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000466 CIL_000466_0002 CGP 16:91621186-91679221
CIL_00037O CIL_00037O_0002 CGP 16:91647506-91688765

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000226 ISS microtubule cytoskeleton organization
GO:0000910 ISS cytokinesis
GO:0003677 IEA DNA binding
GO:0003723 ISS RNA binding
GO:0005515 IPI protein binding
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006397 ISS mRNA processing
GO:0008380 IEA RNA splicing
GO:0016607 ISS nuclear speck
GO:0043484 ISS regulation of RNA splicing
GO:0050733 IPI RS domain binding
GO:0051726 ISS regulation of cell cycle

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000300278 SON-003 protein_coding Homo_sapiens 0 5297
ENST00000356577 SON-001 protein_coding Homo_sapiens 0 5297
ENST00000381679 SON-006 protein_coding Homo_sapiens 0 5297
ENST00000381692 SON-002 protein_coding Homo_sapiens 0 377
ENST00000421541 SON-008 protein_coding Homo_sapiens 0 625
ENST00000435919 RP11-367J7.4-001 processed_pseudogene Homo_sapiens 0 483
ENST00000436227 SON-007 protein_coding Homo_sapiens 0 2015
ENST00000455528 SON-004 nonsense_mediated_decay Homo_sapiens 0 5297
ENST00000475072 SON-010 retained_intron Homo_sapiens 0 377
ENST00000492229 SON-011 processed_transcript Homo_sapiens 0 374

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