C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Son DNA binding protein
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000114037 Son-013 ENSMUSG00000022961 10090 + 16:91647879-91679195 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000114037
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000114037 27.770±9.69 39.729±4.25 17.996±2.37 51.357±11.46 28.383±7.09 18.017±1.44 14.149±2.25 10.395±2.50 40.344±5.25 12.874±1.27 51.652±15.58 20.445±10.11 18.518±4.43

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000466 CIL_000466_0002 CGP 16:91621186-91679221
CIL_00037O CIL_00037O_0002 CGP 16:91647506-91688765

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000226 ISS microtubule cytoskeleton organization
GO:0000910 ISS cytokinesis
GO:0003677 IEA DNA binding
GO:0003723 ISS RNA binding
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006397 ISS mRNA processing
GO:0008380 IEA RNA splicing
GO:0016607 ISS nuclear speck
GO:0043066 IEA negative regulation of apoptotic process
GO:0043484 ISS regulation of RNA splicing
GO:0044822 IEA poly(A) RNA binding
GO:0050733 IPI RS domain binding
GO:0051726 ISS regulation of cell cycle

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000300278 SON-003 protein_coding Homo_sapiens 0 5299
ENST00000303113 DONSON-008 protein_coding Homo_sapiens 8e-22 110
ENST00000356577 SON-001 protein_coding Homo_sapiens 0 5299
ENST00000381679 SON-006 protein_coding Homo_sapiens 0 5297
ENST00000381692 SON-002 protein_coding Homo_sapiens 0 3123
ENST00000421541 SON-008 protein_coding Homo_sapiens 0 1284
ENST00000429093 SON-023 nonsense_mediated_decay Homo_sapiens 0 278
ENST00000435919 RP11-367J7.4-001 processed_pseudogene Homo_sapiens 0 763
ENST00000436227 SON-007 protein_coding Homo_sapiens 0 3374
ENST00000455528 SON-004 nonsense_mediated_decay Homo_sapiens 0 5299
ENST00000457208 SON-013 nonsense_mediated_decay Homo_sapiens 0 778
ENST00000465834 SON-014 retained_intron Homo_sapiens 0 1367
ENST00000467616 SON-019 processed_transcript Homo_sapiens 0 566
ENST00000470533 SON-022 processed_transcript Homo_sapiens 0 582
ENST00000473102 SON-018 processed_transcript Homo_sapiens 0 702
ENST00000475072 SON-010 retained_intron Homo_sapiens 0 379
ENST00000477419 SON-015 retained_intron Homo_sapiens 0 784
ENST00000478183 SON-009 retained_intron Homo_sapiens 0 1454
ENST00000484294 SON-017 processed_transcript Homo_sapiens 0 564
ENST00000491794 SON-016 retained_intron Homo_sapiens 0 933
ENST00000492229 SON-011 processed_transcript Homo_sapiens 0 374

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