C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Ly1 antibody reactive clone
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000114106 Lyar-003 ENSMUSG00000067367 10090 + 5:38220678-38234296 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastColonKidneyOvaryPlacentaTestisENSMUST00000114106
Transcript ID Breast Colon Kidney Ovary Placenta Testis
ENSMUST00000114106 1.211±0.00 0.246±0.06 0.706±0.00 6.414±6.18 20.854±9.85 226.959±326.83

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00096B CIL_00096B_0002 VISTA 5:37667623-38269196
CIL_0008QQ CIL_0008QQ_0002 VISTA 5:37760247-38361421
CIL_00096M CIL_00096M_0002 VISTA 5:37765055-38366694
CIL_0008ZA CIL_0008ZA_0002 VISTA 5:37806142-38406996

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005730 IDA nucleolus
GO:0008150 ND biological_process
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000343470 LYAR-001 protein_coding Homo_sapiens 0 580
ENST00000452476 LYAR-201 protein_coding Homo_sapiens 0 580
ENST00000513174 LYAR-002 protein_coding Homo_sapiens 0 300

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