C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ST3 beta-galactoside alpha-2,3-sialyltransferase 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000114112 St3gal5-002 ENSMUSG00000056091 10090 + 6:72097623-72154571 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonKidneyLiverLungOvaryPlacentaTestisENSMUST00000114112
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000114112 1.152±0.42 47.226±20.72 1.417±0.18 1.944±0.49 0.699±0.06 0.550±0.08 0.582±0.05 25.878±5.23 2.400±0.26 54.027±3.74 1.125±0.13 1.501±0.19

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007WR CIL_0007WR_0002 VISTA 6:71915186-72518828
CIL_00084P CIL_00084P_0002 VISTA 6:71915200-72518764
CIL_0005SY CIL_0005SY_0002 CGP 6:72097592-72235577

Gene Ontology

GO IDEvidence TypeGO Description
GO:0006486 IEA protein glycosylation
GO:0030173 IEA integral component of Golgi membrane
GO:0047291 ISS lactosylceramide alpha-2,3-sialyltransferase activity
GO:0097503 IEA sialylation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000306262 ST3GAL5-012 nonsense_mediated_decay Homo_sapiens 0 401
ENST00000377332 ST3GAL5-001 protein_coding Homo_sapiens 0 1175
ENST00000393805 ST3GAL5-003 protein_coding Homo_sapiens 0 1175
ENST00000393808 ST3GAL5-002 protein_coding Homo_sapiens 0 1173
ENST00000461206 ST3GAL5-013 retained_intron Homo_sapiens 0 640

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