C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: family with sequence similarity 50, member A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000114160 Fam50a-001 ENSMUSG00000001962 10090 + X:74313033-74320149 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000114160
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000114160 7.224±2.09 19.819±7.46 20.153±2.66 14.025±1.65 7.082±3.64 8.640±3.89 2.269±0.42 9.238±1.93 10.923±6.82 7.691±1.38 8.872±1.15 19.026±11.51 29.323±6.99 1.326±0.98

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003LB CIL_0003LB_0002 CGP X:74304998-74320149
CIL_0006K8 CIL_0006K8_0002 CGP X:74313033-74344689

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005634 IEA nucleus
GO:0044822 IEA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000158526 FAM50A-002 protein_coding Homo_sapiens 0 948
ENST00000393600 FAM50A-001 protein_coding Homo_sapiens 0 1271
ENST00000464419 FAM50A-005 retained_intron Homo_sapiens 0 961
ENST00000478509 FAM50A-004 retained_intron Homo_sapiens 0 424
ENST00000481619 FAM50A-007 retained_intron Homo_sapiens 0 765
ENST00000615670 SGK223-001 protein_coding Homo_sapiens 0.0003 53
ENST00000622241 SGK223-201 protein_coding Homo_sapiens 0.0003 53

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