C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RNA binding motif protein 11
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000114249 Rbm11-001 ENSMUSG00000032940 10090 + 16:75592844-75602829 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalLungMuscleENSMUST00000114249
Transcript ID Adrenal Lung Muscle
ENSMUST00000114249 0.176±0.00 0.091±0.00 0.002±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000MR CIL_0000MR_0003 CGP 16:75540514-75602829
CIL_00066K CIL_00066K_0002 CGP 16:75592844-75766821

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0000381 ISO regulation of alternative mRNA splicing, via spliceosome
GO:0005634 ISO nucleus
GO:0005654 ISO nucleoplasm
GO:0008266 IDA poly(U) RNA binding
GO:0016607 ISO nuclear speck
GO:0034599 ISO cellular response to oxidative stress
GO:0042803 ISO protein homodimerization activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000400577 RBM11-001 protein_coding Homo_sapiens 0 549
ENST00000461088 RBM11-005 retained_intron Homo_sapiens 0 433
ENST00000468643 RBM11-002 processed_transcript Homo_sapiens 0 503
ENST00000468788 RBM11-004 processed_transcript Homo_sapiens 0 438
ENST00000495055 RBM11-003 processed_transcript Homo_sapiens 0 217

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