C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: TNFAIP3 interacting protein 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000114359 Tnip2-003 ENSMUSG00000059866 10090 - 5:34496130-34513938 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonHeartLiverLungOvaryENSMUST00000114359
Transcript ID Adipose Adrenal Breast Colon Heart Liver Lung Ovary
ENSMUST00000114359 2.790±0.00 25.124±8.36 6.701±0.00 6.245±2.46 1.164±0.00 2.738±1.22 3.598±0.00 15.421±4.88

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003OC CIL_0003OC_0003 CGP 5:34369933-34513997
CIL_0003SI CIL_0003SI_0002 CGP 5:34496087-34563638

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005737 IDA cytoplasm
GO:0007249 IDA I-kappaB kinase/NF-kappaB signaling

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000315423 TNIP2-001 protein_coding Homo_sapiens 0 492
ENST00000424288 RP11-169L17.5-001 processed_pseudogene Homo_sapiens 0.0000000005 69
ENST00000503235 TNIP2-003 protein_coding Homo_sapiens 0 791
ENST00000505186 TNIP2-006 processed_transcript Homo_sapiens 2e-20 104
ENST00000507686 TNIP2-005 retained_intron Homo_sapiens 0 298
ENST00000510267 TNIP2-002 protein_coding Homo_sapiens 0 300

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