C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: homeobox A3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000114434 Hoxa3-001 ENSMUSG00000079560 10090 - 6:52169062-52213115 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000114434
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000114434 1.072±0.00 2.324±0.28 3.416±0.00 0.626±0.00 2.427±0.00 5.590±0.60 0.254±0.07 4.184±0.92 0.346±0.20 3.996±1.39 1.313±0.11 3.190±1.16 0.381±0.20 2.564±0.16

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007OD CIL_0007OD_0003 UCNEbase 6:51462736-52602127
CIL_0008V2 CIL_0008V2_0002 VISTA 6:51578612-52179694
CIL_0008QL CIL_0008QL_0002 VISTA 6:51878169-52478777
CIL_000911 CIL_000911_0002 VISTA 6:51970433-52571615
CIL_000811 CIL_000811_0002 VISTA 6:52019082-52620287
CIL_00097P CIL_00097P_0002 VISTA 6:52142617-52744529

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001525 IEA angiogenesis
GO:0001974 IMP blood vessel remodeling
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0008284 IMP positive regulation of cell proliferation
GO:0009887 IMP organ morphogenesis
GO:0009952 IGI anterior/posterior pattern specification
GO:0010159 IGI specification of organ position
GO:0021615 IGI glossopharyngeal nerve morphogenesis
GO:0030878 IMP thyroid gland development
GO:0043565 IEA sequence-specific DNA binding
GO:0048538 IGI thymus development
GO:0048645 IMP organ formation
GO:0048704 IGI embryonic skeletal system morphogenesis
GO:0048706 IGI embryonic skeletal system development
GO:0051216 IGI cartilage development
GO:0060017 IGI parathyroid gland development
GO:0071837 IPI HMG box domain binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000222726 HOXA5-001 protein_coding Homo_sapiens 0.0000006 60
ENST00000222728 HOXA6-001 protein_coding Homo_sapiens 3e-33 147
ENST00000239151 HOXB5-001 protein_coding Homo_sapiens 5e-24 117
ENST00000242159 HOXA7-001 protein_coding Homo_sapiens 2e-33 148
ENST00000249440 HOXD3-001 protein_coding Homo_sapiens 0 313
ENST00000306324 HOXD4-001 protein_coding Homo_sapiens 0.000000003 68
ENST00000317201 HOXA3-002 protein_coding Homo_sapiens 0 2614
ENST00000332503 HOXB4-001 protein_coding Homo_sapiens 7e-30 137
ENST00000396352 HOXA3-001 protein_coding Homo_sapiens 0 2518
ENST00000410016 HOXD3-004 protein_coding Homo_sapiens 0 313
ENST00000468418 HOXD3-001 nonsense_mediated_decay Homo_sapiens 0 313
ENST00000518451 HOXA3-008 processed_transcript Homo_sapiens 0 254
ENST00000520854 HOXA5-002 processed_transcript Homo_sapiens 0.0000001 60
ENST00000521401 HOXA3-006 processed_transcript Homo_sapiens 0 195
ENST00000521478 HOXA6-002 processed_transcript Homo_sapiens 2e-33 147
ENST00000522456 HOXA3-004 protein_coding Homo_sapiens 0 383
ENST00000522788 HOXA3-005 protein_coding Homo_sapiens 0 702
ENST00000523796 HOXA7-003 processed_transcript Homo_sapiens 4e-34 148
ENST00000612286 HOXA3-201 protein_coding Homo_sapiens 0 2614

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