C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: interleukin 1 receptor antagonist
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000114487 Il1rn-001 ENSMUSG00000026981 10090 + 2:24336853-24351494 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBreastColonLiverLungOvaryPlacentaENSMUST00000114487
Transcript ID Adipose Bladder Breast Colon Liver Lung Ovary Placenta
ENSMUST00000114487 0.171±0.11 0.666±0.33 0.234±0.00 2.759±0.34 0.839±0.48 1.064±0.00 0.141±0.05 0.252±0.07

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000190 CIL_000190_0002 CGP 2:24291196-24351494
CIL_000191 CIL_000191_0002 CGP 2:24336853-24409182

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005576 IDA extracellular region
GO:0005737 IEA cytoplasm
GO:0006629 IMP lipid metabolic process
GO:0030073 IMP insulin secretion
GO:0031982 IDA vesicle

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000259206 IL1RN-001 protein_coding Homo_sapiens 0 412
ENST00000354115 IL1RN-002 protein_coding Homo_sapiens 0 448
ENST00000361779 IL1RN-003 protein_coding Homo_sapiens 0 412
ENST00000409052 IL1RN-004 protein_coding Homo_sapiens 0 412
ENST00000409930 IL1RN-005 protein_coding Homo_sapiens 0 412
ENST00000472292 IL1RN-009 retained_intron Homo_sapiens 2e-32 143
ENST00000486167 IL1RN-008 retained_intron Homo_sapiens 4e-35 152

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