C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: calcium channel, voltage-dependent, beta 2 subunit
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000114719 Cacnb2-007 ENSMUSG00000057914 10090 + 2:14873820-14986149 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000114719
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000114719 1.586±1.26 4.588±2.23 2.758±2.47 0.077±0.00 0.812±0.11 7.381±0.86 0.286±0.09 0.083±0.08 1.538±0.56 0.027±0.00 3.126±0.96 0.290±0.04 0.201±0.08

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005AA CIL_0005AA_0002 CGP 2:14388316-14987908
CIL_0005A3 CIL_0005A3_0002 CGP 2:14604306-15054884

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005886 TAS plasma membrane
GO:0005891 IDA voltage-gated calcium channel complex
GO:0007268 IMP synaptic transmission
GO:0007601 IMP visual perception
GO:0008331 TAS high voltage-gated calcium channel activity
GO:0034765 IEA regulation of ion transmembrane transport
GO:0070588 IEA calcium ion transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000282343 CACNB2-002 protein_coding Homo_sapiens 0 2324
ENST00000324631 CACNB2-001 protein_coding Homo_sapiens 0 2324
ENST00000352115 CACNB2-008 protein_coding Homo_sapiens 0 1476
ENST00000377315 CACNB2-004 protein_coding Homo_sapiens 0 2595
ENST00000377319 CACNB2-005 protein_coding Homo_sapiens 0 1478
ENST00000377328 CACNB2-009 protein_coding Homo_sapiens 0 878
ENST00000377329 CACNB2-007 protein_coding Homo_sapiens 0 2324
ENST00000377331 CACNB2-010 protein_coding Homo_sapiens 0 1476
ENST00000396576 CACNB2-003 protein_coding Homo_sapiens 0 2326
ENST00000498816 CACNB2-006 retained_intron Homo_sapiens 0 311
ENST00000612134 CACNB2-201 protein_coding Homo_sapiens 0 1478
ENST00000615785 CACNB2-203 protein_coding Homo_sapiens 0 878
ENST00000617363 CACNB2-204 protein_coding Homo_sapiens 0 1476

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