C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: calcium channel, voltage-dependent, beta 2 subunit
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000114723 Cacnb2-004 ENSMUSG00000057914 10090 + 2:14604306-14987908 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000114723
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000114723 0.958±0.78 3.193±1.03 4.731±1.90 2.240±1.59 0.068±0.03 0.688±0.10 2.408±0.41 0.343±0.14 0.066±0.05 1.037±0.19 0.068±0.02 1.406±0.45 1.425±0.00 0.102±0.02

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005AA CIL_0005AA_0002 CGP 2:14388316-14987908
CIL_0005A3 CIL_0005A3_0002 CGP 2:14604306-15054884

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005886 TAS plasma membrane
GO:0005891 IDA voltage-gated calcium channel complex
GO:0007268 IMP synaptic transmission
GO:0007601 IMP visual perception
GO:0008331 TAS high voltage-gated calcium channel activity
GO:0034765 IEA regulation of ion transmembrane transport
GO:0051928 IEA positive regulation of calcium ion transport
GO:0070509 IEA calcium ion import
GO:0070588 IEA calcium ion transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000282343 CACNB2-002 protein_coding Homo_sapiens 0 2435
ENST00000324631 CACNB2-001 protein_coding Homo_sapiens 0 2543
ENST00000352115 CACNB2-008 protein_coding Homo_sapiens 0 1476
ENST00000377315 CACNB2-004 protein_coding Homo_sapiens 0 2324
ENST00000377319 CACNB2-005 protein_coding Homo_sapiens 0 1478
ENST00000377328 CACNB2-009 protein_coding Homo_sapiens 0 878
ENST00000377329 CACNB2-007 protein_coding Homo_sapiens 0 2326
ENST00000377331 CACNB2-010 protein_coding Homo_sapiens 0 1476
ENST00000396576 CACNB2-003 protein_coding Homo_sapiens 0 2324
ENST00000498816 CACNB2-006 retained_intron Homo_sapiens 0 313
ENST00000612134 CACNB2-201 protein_coding Homo_sapiens 0 1478
ENST00000615785 CACNB2-203 protein_coding Homo_sapiens 0 878
ENST00000617363 CACNB2-204 protein_coding Homo_sapiens 0 1476

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