C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ATP-binding cassette, sub-family B (MDR/TAP), member 8
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000115074 Abcb8-002 ENSMUSG00000028973 10090 + 5:24394396-24403977 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; OvaryPlacentaTestisENSMUST00000115074
Transcript ID Ovary Placenta Testis
ENSMUST00000115074 5.547±0.00 5.146±0.69 2.234±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008T1 CIL_0008T1_0002 VISTA 5:24041638-24646055
CIL_0004O6 CIL_0004O6_0002 CGP 5:24384181-24410054
CIL_0004O7 CIL_0004O7_0002 CGP 5:24393663-24417834

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005524 IEA ATP binding
GO:0005739 IDA mitochondrion
GO:0016021 IBA integral component of membrane
GO:0042626 IBA ATPase activity, coupled to transmembrane movement of substances
GO:0055085 IBA transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000297504 ABCB8-003 protein_coding Homo_sapiens 0 1062
ENST00000358849 ABCB8-005 protein_coding Homo_sapiens 0 1166
ENST00000466514 ABCB8-007 nonsense_mediated_decay Homo_sapiens 0 732
ENST00000470645 ABCB8-004 nonsense_mediated_decay Homo_sapiens 0 424
ENST00000477092 ABCB8-010 protein_coding Homo_sapiens 0 1134
ENST00000477719 ABCB8-009 protein_coding Homo_sapiens 0 1138
ENST00000482309 ABCB8-006 nonsense_mediated_decay Homo_sapiens 0 878
ENST00000491920 ABCB8-023 protein_coding Homo_sapiens 0 455
ENST00000498578 ABCB8-008 protein_coding Homo_sapiens 0 1138
ENST00000542328 ABCB8-201 protein_coding Homo_sapiens 0 878

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