C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: protection of telomeres 1A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000115330 Pot1a-001 ENSMUSG00000029676 10090 - 6:25743737-25809226 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000115330
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000115330 2.631±0.26 0.720±0.46 3.097±0.48 3.079±1.62 2.109±0.78 1.033±0.62 2.008±0.33 1.635±0.65 4.108±4.06 2.560±0.19 2.883±0.50 2.169±1.05 1.362±0.80 0.688±0.23

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001OL CIL_0001OL_0002 CGP 6:25743737-28135178

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000781 ISS chromosome, telomeric region
GO:0000783 IDA nuclear telomere cap complex
GO:0005515 IPI protein binding
GO:0005654 TAS nucleoplasm
GO:0007004 ISS telomere maintenance via telomerase
GO:0042162 ISO telomeric DNA binding
GO:0043047 ISS single-stranded telomeric DNA binding
GO:0051276 IGI chromosome organization

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000357628 POT1-001 protein_coding Homo_sapiens 0 1315
ENST00000446993 POT1-003 protein_coding Homo_sapiens 0 298
ENST00000607932 POT1-011 nonsense_mediated_decay Homo_sapiens 0 1005
ENST00000608057 POT1-012 nonsense_mediated_decay Homo_sapiens 0 704
ENST00000609106 POT1-019 nonsense_mediated_decay Homo_sapiens 0 1273
ENST00000609702 POT1-013 protein_coding Homo_sapiens 0 272

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