C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: histone deacetylase 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000115642 Hdac6-001 ENSMUSG00000031161 10090 - X:7930120-7947889 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000115642
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000115642 7.561±2.19 5.879±2.24 3.306±0.98 13.427±8.83 7.436±2.48 5.448±1.17 3.076±0.27 15.607±3.53 4.886±1.57 3.914±0.61 0.917±0.48 17.018±8.29 10.822±6.01 10.954±4.92

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00029K CIL_00029K_0002 CGP X:7930120-7978071

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000209 IDA protein polyubiquitination
GO:0003779 IEA actin binding
GO:0004407 IDA histone deacetylase activity
GO:0005515 IPI protein binding
GO:0005634 TAS nucleus
GO:0005737 IDA cytoplasm
GO:0005829 IDA cytosol
GO:0005881 IDA cytoplasmic microtubule
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006476 IDA protein deacetylation
GO:0006511 IGI ubiquitin-dependent protein catabolic process
GO:0007026 IDA negative regulation of microtubule depolymerization
GO:0008017 IDA microtubule binding
GO:0008270 IEA zinc ion binding
GO:0016575 IDA histone deacetylation
GO:0030424 IDA axon
GO:0030425 IDA dendrite
GO:0032041 IEA NAD-dependent histone deacetylase activity (H3-K14 specific)
GO:0042903 IDA tubulin deacetylase activity
GO:0043130 IDA ubiquitin binding
GO:0043162 IMP ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway
GO:0043204 IDA perikaryon
GO:0043234 IPI protein complex
GO:0043241 IGI protein complex disassembly
GO:0045598 IMP regulation of fat cell differentiation
GO:0046969 IEA NAD-dependent histone deacetylase activity (H3-K9 specific)
GO:0046970 IEA NAD-dependent histone deacetylase activity (H4-K16 specific)
GO:0048487 IDA beta-tubulin binding
GO:0070201 IMP regulation of establishment of protein localization
GO:0070842 IGI aggresome assembly
GO:0070846 IMP Hsp90 deacetylation
GO:0070932 IEA histone H3 deacetylation
GO:0070933 IEA histone H4 deacetylation
GO:0071218 IMP cellular response to misfolded protein
GO:0090042 IMP tubulin deacetylation
GO:0097372 IEA NAD-dependent histone deacetylase activity (H3-K18 specific)

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000334136 HDAC6-001 protein_coding Homo_sapiens 0 2497
ENST00000376610 HDAC6-023 protein_coding Homo_sapiens 0 601
ENST00000376619 HDAC6-017 protein_coding Homo_sapiens 0 2495
ENST00000376643 HDAC6-007 protein_coding Homo_sapiens 0 601
ENST00000423941 HDAC6-020 protein_coding Homo_sapiens 0 361
ENST00000426196 HDAC6-015 protein_coding Homo_sapiens 0 817
ENST00000440653 HDAC6-031 protein_coding Homo_sapiens 0 457
ENST00000441703 HDAC6-028 protein_coding Homo_sapiens 0 446
ENST00000443563 HDAC6-030 protein_coding Homo_sapiens 0 448
ENST00000462730 HDAC6-003 retained_intron Homo_sapiens 0 379
ENST00000465269 HDAC6-004 retained_intron Homo_sapiens 0 379
ENST00000468949 HDAC6-032 retained_intron Homo_sapiens 0 496
ENST00000469223 HDAC6-022 processed_transcript Homo_sapiens 0 680
ENST00000470942 HDAC6-037 retained_intron Homo_sapiens 0 348
ENST00000476625 HDAC6-005 retained_intron Homo_sapiens 0 337
ENST00000477528 HDAC6-002 retained_intron Homo_sapiens 0 2121
ENST00000477561 HDAC6-025 processed_transcript Homo_sapiens 0 669
ENST00000481929 HDAC6-027 retained_intron Homo_sapiens 0 379
ENST00000483656 HDAC6-024 processed_transcript Homo_sapiens 0 580
ENST00000486227 HDAC6-018 retained_intron Homo_sapiens 0 1277
ENST00000486665 HDAC6-036 processed_transcript Homo_sapiens 0 488
ENST00000489352 HDAC6-029 retained_intron Homo_sapiens 0 337
ENST00000493923 HDAC6-009 retained_intron Homo_sapiens 8.99999e-40 167

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