C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: protocadherin alpha 10
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000115658 Pcdha10-206 ENSMUSG00000007440 10090 + 18:37005320-37187657 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverMuscleOvaryENSMUST00000115658
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Muscle Ovary
ENSMUST00000115658 0.100±0.05 0.383±0.07 6.532±0.00 0.056±0.01 0.229±0.00 0.029±0.00 0.024±0.01 0.011±0.01 0.002±0.00 0.100±0.04

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005886 IEA plasma membrane
GO:0007156 IEA homophilic cell adhesion via plasma membrane adhesion molecules
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000253807 PCDHAC1-001 protein_coding Homo_sapiens 0 3354
ENST00000289269 PCDHAC2-001 protein_coding Homo_sapiens 0 3354
ENST00000289272 PCDHA13-003 protein_coding Homo_sapiens 0 4124
ENST00000307360 PCDHA10-002 protein_coding Homo_sapiens 0 4185
ENST00000356878 PCDHA7-002 protein_coding Homo_sapiens 0 1417
ENST00000378122 PCDHA9-002 protein_coding Homo_sapiens 0 1454
ENST00000378123 PCDHA8-002 protein_coding Homo_sapiens 0 832
ENST00000378125 PCDHA4-201 protein_coding Homo_sapiens 0 1469
ENST00000378126 PCDHA6-003 protein_coding Homo_sapiens 0 826
ENST00000378132 PCDHA2-003 protein_coding Homo_sapiens 0 1273
ENST00000378133 PCDHA1-003 protein_coding Homo_sapiens 0 1225
ENST00000394633 PCDHA1-001 protein_coding Homo_sapiens 0 885
ENST00000398631 PCDHA12-001 protein_coding Homo_sapiens 0 4159
ENST00000398640 PCDHA11-001 protein_coding Homo_sapiens 0 4146
ENST00000409494 PCDHA13-002 protein_coding Homo_sapiens 0 2351
ENST00000504120 PCDHA1-002 protein_coding Homo_sapiens 0 4505
ENST00000506751 PCDHA14-001 transcribed_unprocessed_pseudogene Homo_sapiens 0 848
ENST00000506939 PCDHA10-001 protein_coding Homo_sapiens 0 2547
ENST00000512229 PCDHA4-002 protein_coding Homo_sapiens 0 1818
ENST00000520672 PCDHA2-002 protein_coding Homo_sapiens 0 1273
ENST00000522353 PCDHA3-001 protein_coding Homo_sapiens 0 4673
ENST00000525929 PCDHA7-001 protein_coding Homo_sapiens 0 3360
ENST00000526136 PCDHA2-001 protein_coding Homo_sapiens 0 4567
ENST00000527624 PCDHA6-002 protein_coding Homo_sapiens 0 885
ENST00000529310 PCDHA6-001 protein_coding Homo_sapiens 0 4106
ENST00000529619 PCDHA5-002 protein_coding Homo_sapiens 0 1478
ENST00000529859 PCDHA5-001 protein_coding Homo_sapiens 0 3356
ENST00000530339 PCDHA4-001 protein_coding Homo_sapiens 0 4782
ENST00000531613 PCDHA8-001 protein_coding Homo_sapiens 0 4128
ENST00000532566 PCDHA3-002 protein_coding Homo_sapiens 0 1384
ENST00000532602 PCDHA9-001 protein_coding Homo_sapiens 0 4737
ENST00000562220 PCDHA10-003 protein_coding Homo_sapiens 0 902
ENST00000613593 PCDHA12-002 protein_coding Homo_sapiens 0 880
ENST00000613766 PCDHAC2-003 processed_transcript Homo_sapiens 0 673
ENST00000614258 PCDHA5-003 protein_coding Homo_sapiens 0 883
ENST00000616325 PCDHA11-002 protein_coding Homo_sapiens 0 870
ENST00000617408 PCDHA11-003 protein_coding Homo_sapiens 0 475
ENST00000617566 PCDHAC2-004 retained_intron Homo_sapiens 0 252
ENST00000617769 PCDHA13-001 protein_coding Homo_sapiens 0 488
ENST00000618834 PCDHA4-003 protein_coding Homo_sapiens 0 1469

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