C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tubulin polyglutamylase complex subunit 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000115817 Tpgs2-001 ENSMUSG00000024269 10090 - 18:25136037-25169007 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000115817
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000115817 4.351±0.62 2.287±0.25 8.850±0.36 11.538±6.05 3.619±0.81 2.488±0.32 2.159±0.14 3.467±0.25 1.934±0.56 4.161±0.14 1.675±0.25 6.840±2.32 2.226±1.27 60.110±28.89

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003VO CIL_0003VO_0002 CGP 18:24709445-25169007
CIL_0008E2 CIL_0008E2_0002 VISTA 18:24940595-25541640
CIL_00092R CIL_00092R_0002 VISTA 18:25077370-25678646
CIL_0002FL CIL_0002FL_0003 CGP 18:25127223-25467321

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000334295 TPGS2-001 protein_coding Homo_sapiens 0 989
ENST00000383056 TPGS2-002 protein_coding Homo_sapiens 0 580
ENST00000585635 TPGS2-007 nonsense_mediated_decay Homo_sapiens 0 676
ENST00000587129 TPGS2-019 protein_coding Homo_sapiens 0 774
ENST00000587382 TPGS2-006 protein_coding Homo_sapiens 0 765
ENST00000589049 TPGS2-005 protein_coding Homo_sapiens 0 774
ENST00000590258 TPGS2-015 protein_coding Homo_sapiens 0 217
ENST00000590500 TPGS2-013 protein_coding Homo_sapiens 0 531
ENST00000590652 TPGS2-014 nonsense_mediated_decay Homo_sapiens 0 318
ENST00000590842 TPGS2-004 protein_coding Homo_sapiens 0 774
ENST00000591823 TPGS2-011 nonsense_mediated_decay Homo_sapiens 0 712
ENST00000591906 TPGS2-012 protein_coding Homo_sapiens 0 652
ENST00000593035 TPGS2-003 protein_coding Homo_sapiens 0 588
ENST00000614939 TPGS2-202 protein_coding Homo_sapiens 0 776

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