C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: 4-aminobutyrate aminotransferase
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000115839 Abat-005 ENSMUSG00000057880 10090 + 16:8513485-8619570 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000115839
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000115839 5.352±0.96 19.729±4.34 29.695±0.00 1.358±0.30 33.355±2.05 1.750±0.19 46.826±13.03 42.546±9.76 1.207±0.15 9.078±1.94 2.232±1.59 2.620±0.73

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007RL CIL_0007RL_0002 VISTA 16:7923606-8524476
CIL_0000ER CIL_0000ER_0002 CGP 16:8470788-8621568
CIL_0000EU CIL_0000EU_0002 CGP 16:8513429-8637712

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003867 ISS 4-aminobutyrate transaminase activity
GO:0005739 ISS mitochondrion
GO:0009448 IEA gamma-aminobutyric acid metabolic process
GO:0030170 ISS pyridoxal phosphate binding
GO:0032144 ISS 4-aminobutyrate transaminase complex
GO:0032145 ISS succinate-semialdehyde dehydrogenase binding
GO:0042135 IEA neurotransmitter catabolic process
GO:0042803 ISS protein homodimerization activity
GO:0047298 IEA (S)-3-amino-2-methylpropionate transaminase activity
GO:0048148 IMP behavioral response to cocaine

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000268251 ABAT-001 protein_coding Homo_sapiens 0 1057
ENST00000396600 ABAT-201 protein_coding Homo_sapiens 0 1033
ENST00000425191 ABAT-005 protein_coding Homo_sapiens 0 1033
ENST00000564453 ABAT-015 retained_intron Homo_sapiens 9.80909e-45 183
ENST00000564869 TMEM186-002 processed_transcript Homo_sapiens 6e-38 161
ENST00000566590 ABAT-002 nonsense_mediated_decay Homo_sapiens 0 904
ENST00000567812 ABAT-003 protein_coding Homo_sapiens 0 1033
ENST00000569156 ABAT-006 protein_coding Homo_sapiens 0 1033

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