C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: estrogen related receptor, beta
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000116402 Esrrb-001 ENSMUSG00000021255 10090 + 12:86361117-86521628 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaENSMUST00000116402
Transcript ID Adipose Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENSMUST00000116402 0.016±0.00 0.204±0.03 0.067±0.04 4.504±0.47 1.203±0.43 0.042±0.00 0.150±0.01 0.500±0.34 0.375±0.12 0.773±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007M1 CIL_0007M1_0002 UCNEbase 12:86115809-86636147
CIL_0005O2 CIL_0005O2_0002 CGP 12:86241890-86521628
CIL_0003P4 CIL_0003P4_0002 CGP 12:86361117-86692091

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000980 IDA RNA polymerase II distal enhancer sequence-specific DNA binding
GO:0001701 IMP in utero embryonic development
GO:0001831 IMP trophectodermal cellular morphogenesis
GO:0001834 IMP trophectodermal cell proliferation
GO:0001892 IMP embryonic placenta development
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0003707 IEA steroid hormone receptor activity
GO:0003713 IDA transcription coactivator activity
GO:0005496 IEA steroid binding
GO:0005515 IPI protein binding
GO:0005634 IEA:IDA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA:ISS regulation of transcription, DNA-templated
GO:0008134 IPI transcription factor binding
GO:0008270 IEA zinc ion binding
GO:0019827 IMP stem cell maintenance
GO:0043401 IEA steroid hormone mediated signaling pathway
GO:0043565 IEA:ISS sequence-specific DNA binding
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000007600 esrrb-201 protein_coding Danio_rerio 0 671
ENSDART00000009104 esrrga-001 protein_coding Danio_rerio 0 619
ENSDART00000126966 esrrga-201 protein_coding Danio_rerio 0 309
ENSDART00000100658 esrra-201 protein_coding Danio_rerio 6e-31 141
ENSDART00000125432 esrrd-201 protein_coding Danio_rerio 2e-16 94
ENST00000380887 ESRRB-003 protein_coding Homo_sapiens 0 1607
ENST00000505752 ESRRB-001 nonsense_mediated_decay Homo_sapiens 0 1605
ENST00000507951 ESRRB-005 processed_transcript Homo_sapiens 0 857
ENST00000509242 ESRRB-201 protein_coding Homo_sapiens 0 1607
ENST00000509323 ESRRB-004 processed_transcript Homo_sapiens 0 348
ENST00000512784 ESRRB-002 protein_coding Homo_sapiens 0 1873
ENST00000556177 ESRRB-006 protein_coding Homo_sapiens 0 1635

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