C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: WAS protein family homolog
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000116556 Wash-202 ENSMUSG00000024101 10090 + 17:66111645-66120503 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000116556
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000116556 5.894±0.88 4.032±1.30 2.121±0.00 9.693±0.61 2.570±0.00 3.730±0.21 1.344±0.83 3.890±1.14 2.803±1.10 4.197±0.00 2.772±0.40 11.422±5.97 7.339±3.91 3.385±1.24

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000RP CIL_0000RP_0002 CGP 17:66111546-66152167

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003779 IEA actin binding
GO:0005769 ISS early endosome
GO:0016020 IEA membrane
GO:0016197 IMP endosomal transport
GO:0034314 IMP Arp2/3 complex-mediated actin nucleation
GO:0042147 ISS retrograde transport, endosome to Golgi
GO:0043014 ISS alpha-tubulin binding
GO:0055037 IDA recycling endosome
GO:0071203 ISS WASH complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000326592 WASH4P-001 protein_coding Homo_sapiens 0 981
ENST00000340131 WASH6P-013 processed_transcript Homo_sapiens 0 460
ENST00000354296 WASH3P-003 processed_transcript Homo_sapiens 0 612
ENST00000359512 WASH6P-012 transcribed_unprocessed_pseudogene Homo_sapiens 0 745
ENST00000400706 WASH7P-001 unprocessed_pseudogene Homo_sapiens 0 1107
ENST00000442898 WASH1-001 protein_coding Homo_sapiens 0 1153
ENST00000453662 WASH2P-001 transcribed_unprocessed_pseudogene Homo_sapiens 0 1109
ENST00000460206 WASH6P-014 processed_transcript Homo_sapiens 0 418
ENST00000461007 WASH6P-016 processed_transcript Homo_sapiens 5.99994e-41 174
ENST00000462860 WASH4P-002 nonsense_mediated_decay Homo_sapiens 0 961
ENST00000464205 WASH6P-011 processed_transcript Homo_sapiens 0 237
ENST00000468574 WASH4P-006 retained_intron Homo_sapiens 0 472
ENST00000470725 WASH4P-008 retained_intron Homo_sapiens 2e-40 172
ENST00000475594 WASH6P-008 processed_transcript Homo_sapiens 8.99998e-41 171
ENST00000476066 WASH6P-005 processed_transcript Homo_sapiens 0 405
ENST00000477365 WASH4P-013 retained_intron Homo_sapiens 0 472
ENST00000479401 WASH6P-004 processed_transcript Homo_sapiens 0 702
ENST00000482170 WASH6P-006 processed_transcript Homo_sapiens 0 333
ENST00000483286 WASH6P-010 processed_transcript Homo_sapiens 0 370
ENST00000483390 WASH4P-009 nonsense_mediated_decay Homo_sapiens 0 717
ENST00000484415 WASH6P-001 processed_transcript Homo_sapiens 0 601
ENST00000487568 WASH4P-005 retained_intron Homo_sapiens 0 291
ENST00000488147 WASH7P-001 unprocessed_pseudogene Homo_sapiens 0 821
ENST00000492963 WASH6P-015 processed_transcript Homo_sapiens 0 460
ENST00000495251 WASH4P-003 nonsense_mediated_decay Homo_sapiens 0 525
ENST00000496011 WASH6P-007 processed_transcript Homo_sapiens 0 466
ENST00000538033 WASH2P-002 retained_intron Homo_sapiens 0 470
ENST00000538848 WASH4P-015 nonsense_mediated_decay Homo_sapiens 0 713
ENST00000557932 WASH3P-001 processed_transcript Homo_sapiens 0 1160
ENST00000558784 WASH3P-005 processed_transcript Homo_sapiens 0 804
ENST00000560956 WASH3P-007 transcribed_unprocessed_pseudogene Homo_sapiens 0 1153
ENST00000564273 WASH4P-014 retained_intron Homo_sapiens 0 525
ENST00000574122 WASH7P-001 unprocessed_pseudogene Homo_sapiens 0 1107
ENST00000623083 FO538757.2-202 protein_coding Homo_sapiens 0 1158
ENST00000623834 FO538757.2-201 protein_coding Homo_sapiens 0 811
ENST00000624735 FO538757.2-203 protein_coding Homo_sapiens 0 828

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