C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SKI family transcriptional corepressor 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000116613 Skor1-003 ENSMUSG00000022245 10090 - 9:63138170-63148961 protein_coding

Mus musculus EnsemblGRCm38

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Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000116613
Transcript ID Adipose Bladder Brain Breast Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000116613 0.025±0.02 0.035±0.00 2.354±2.81 0.018±0.01 0.019±0.00 0.012±0.00 0.011±0.01 0.007±0.00 0.038±0.02 0.020±0.01 0.043±0.03 0.637±0.15

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008FO CIL_0008FO_0002 VISTA 9:62808235-63410238
CIL_00098T CIL_00098T_0002 VISTA 9:62831587-63433435
CIL_0008DX CIL_0008DX_0002 VISTA 9:62876076-63477276
CIL_00050U CIL_00050U_0002 CGP 9:62880077-63148961
CIL_0004FE CIL_0004FE_0002 CGP 9:63138170-63377902

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IBA negative regulation of transcription from RNA polymerase II promoter
GO:0003677 IEA DNA binding
GO:0003714 IDA transcription corepressor activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005667 IDA transcription factor complex
GO:0005737 IBA cytoplasm
GO:0030512 IBA negative regulation of transforming growth factor beta receptor signaling pathway
GO:0045892 IDA negative regulation of transcription, DNA-templated
GO:0046332 IBA SMAD binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000126643 SKOR2-203 protein_coding Danio_rerio 0 442
ENSDART00000124640 SKOR2-202 protein_coding Danio_rerio 0 442
ENSDART00000101289 SKOR2-201 protein_coding Danio_rerio 0 442
ENSDART00000100104 skor1a-001 protein_coding Danio_rerio 0 243
ENST00000341418 SKOR1-001 protein_coding Homo_sapiens 0 1013
ENST00000380035 SKOR1-003 protein_coding Homo_sapiens 0 3301
ENST00000554054 SKOR1-004 protein_coding Homo_sapiens 0 3301
ENST00000554240 SKOR1-002 protein_coding Homo_sapiens 0 3450

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