C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted pseudogene 15427
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000117288 Gm15427-001 ENSMUSG00000081051 10090 + 1:95498621-95499151 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000117288
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000117288 115.549±20.99 41.433±7.99 82.200±4.10 41.187±4.55 240.096±122.84 148.803±53.26 43.822±3.91 62.153±33.82 32.916±24.87 115.082±26.51 2.735±0.64 392.587±319.20 17.343±12.12 30.211±16.06

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004Z8 CIL_0004Z8_0002 CGP 1:95313623-95667571

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000030215 rpl18a-001 protein_coding Danio_rerio 0 420
ENSDART00000148933 rpl18a-002 nonsense_mediated_decay Danio_rerio 0 296
ENST00000222247 RPL18A-001 protein_coding Homo_sapiens 0 643
ENST00000391389 RP11-134K1.2-001 processed_pseudogene Homo_sapiens 0 560
ENST00000401937 RP4-803A2.1-001 processed_pseudogene Homo_sapiens 0 425
ENST00000413663 RP11-353H3.1-001 processed_pseudogene Homo_sapiens 0 390
ENST00000424057 RPL18AP16-001 processed_pseudogene Homo_sapiens 0 531
ENST00000430258 RPL18AP15-001 processed_pseudogene Homo_sapiens 0 470
ENST00000455430 AC004692.5-001 processed_pseudogene Homo_sapiens 0.00000001 64
ENST00000456046 AC079250.1-001 processed_pseudogene Homo_sapiens 0 599
ENST00000457038 RP11-40H20.5-001 processed_pseudogene Homo_sapiens 0 497
ENST00000462885 RPL18AP3-001 processed_pseudogene Homo_sapiens 0 632
ENST00000469219 RP11-85G20.1-001 processed_pseudogene Homo_sapiens 0 464
ENST00000597648 RPL18A-007 protein_coding Homo_sapiens 0 577
ENST00000599870 RPL18A-005 protein_coding Homo_sapiens 0 612
ENST00000599898 RPL18A-008 protein_coding Homo_sapiens 0 477
ENST00000600147 RPL18A-002 protein_coding Homo_sapiens 0.000000000000009 86

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