C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: bestrophin 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000117346 Best1-001 ENSMUSG00000037418 10090 - 19:9985174-10001633 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000117346
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000117346 1.020±0.00 0.228±0.07 1.721±0.00 0.311±0.21 0.806±0.02 0.241±0.15 0.108±0.03 0.170±0.04 0.046±0.02 0.995±0.00 0.064±0.01 0.654±0.33 0.077±0.05 140.445±52.82

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000055 CIL_000055_0002 CGP 19:9982703-10001633
CIL_000056 CIL_000056_0002 CGP 19:9985174-10038380

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005254 IEA chloride channel activity
GO:0006821 IEA chloride transport
GO:0016323 ISS basolateral plasma membrane
GO:0030321 IEP transepithelial chloride transport
GO:0034707 IEA chloride channel complex
GO:0050908 IMP detection of light stimulus involved in visual perception
GO:0051924 IMP regulation of calcium ion transport
GO:1902476 IEA chloride transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000378043 BEST1-001 protein_coding Homo_sapiens 0 1079
ENST00000449131 BEST1-002 protein_coding Homo_sapiens 0 974
ENST00000524877 BEST1-005 retained_intron Homo_sapiens 0 656
ENST00000524926 BEST1-003 nonsense_mediated_decay Homo_sapiens 0 850
ENST00000526988 BEST1-006 protein_coding Homo_sapiens 0 656
ENST00000529265 BEST1-008 retained_intron Homo_sapiens 0 745
ENST00000533521 BEST1-007 retained_intron Homo_sapiens 0 270
ENST00000534553 BEST1-004 protein_coding Homo_sapiens 0 257

Loading