C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene 12568
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000117362 Gm12568-001 ENSMUSG00000081078 10090 - 11:46243571-46244194 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000117362
Transcript ID Adipose Bladder Brain Breast Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000117362 0.077±0.01 0.117±0.00 0.226±0.07 0.187±0.00 0.112±0.03 0.105±0.09 0.079±0.00 0.068±0.00 0.261±0.11 0.061±0.01 0.041±0.02

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00094M CIL_00094M_0002 VISTA 11:45901358-46503267
CIL_00023S CIL_00023S_0002 CGP 11:46193850-46312859

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000111964 hmgb1a-201 protein_coding Danio_rerio 0 302
ENST00000255320 HMGB1P5-001 transcribed_processed_pseudogene Homo_sapiens 0 737
ENST00000326004 HMGB1-003 protein_coding Homo_sapiens 0 579
ENST00000339872 HMGB1-001 protein_coding Homo_sapiens 0 730
ENST00000341423 HMGB1-004 protein_coding Homo_sapiens 0 730
ENST00000395823 HMGB1P10-001 processed_pseudogene Homo_sapiens 0 643
ENST00000399489 HMGB1-009 protein_coding Homo_sapiens 0 579
ENST00000399494 HMGB1-011 protein_coding Homo_sapiens 0 730
ENST00000402555 HMGB1P20-001 processed_pseudogene Homo_sapiens 0 492
ENST00000405805 HMGB1-012 protein_coding Homo_sapiens 0 730
ENST00000406019 HMGB1P13-001 processed_pseudogene Homo_sapiens 0 516
ENST00000413899 HMGB1P11-001 processed_pseudogene Homo_sapiens 0 606
ENST00000435986 HMGB1P45-001 processed_pseudogene Homo_sapiens 0 483
ENST00000437242 HMGB1P31-001 processed_pseudogene Homo_sapiens 0 351
ENST00000438594 HMGB1P12-001 processed_pseudogene Homo_sapiens 0 396
ENST00000439613 HMGB1P37-001 processed_pseudogene Homo_sapiens 0 538
ENST00000447155 HMGB1P16-001 processed_pseudogene Homo_sapiens 0 473
ENST00000451497 HMGB1P5-002 processed_transcript Homo_sapiens 0 555
ENST00000452520 HMGB1P26-001 processed_pseudogene Homo_sapiens 0 534
ENST00000455362 HMGB1P4-001 processed_pseudogene Homo_sapiens 0 566
ENST00000459868 FMO1-004 processed_transcript Homo_sapiens 0 222
ENST00000487709 HMGB1P36-001 processed_pseudogene Homo_sapiens 0 327
ENST00000490788 HMGB1-008 processed_transcript Homo_sapiens 0 257
ENST00000522557 HMGB1P1-001 processed_pseudogene Homo_sapiens 0 699
ENST00000558211 HMGB1P8-001 processed_pseudogene Homo_sapiens 0 233
ENST00000569046 RP11-673C5.1-001 processed_pseudogene Homo_sapiens 0 699
ENST00000611897 RP11-19G24.3-002 processed_transcript Homo_sapiens 0 187
ENST00000615653 RP11-19G24.3-001 transcribed_processed_pseudogene Homo_sapiens 0 638

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