C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: WD repeat domain 12
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000117438 Wdr12-002 ENSMUSG00000026019 10090 - 1:60076868-60098645 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000117438
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000117438 2.165±0.43 1.146±0.00 1.850±0.00 1.346±0.42 0.545±0.05 1.823±0.23 1.359±0.30 1.738±0.92 1.198±0.43 3.093±0.41 1.568±0.41 1.869±0.59 20.127±2.04

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00020R CIL_00020R_0002 CGP 1:59982490-60098645
CIL_00020W CIL_00020W_0002 CGP 1:60069785-60153953

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000463 ISS maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000466 ISS maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005654 ISS nucleoplasm
GO:0005730 ISS nucleolus
GO:0007219 IPI Notch signaling pathway
GO:0008283 ISS cell proliferation
GO:0030687 ISS preribosome, large subunit precursor
GO:0043021 IEA ribonucleoprotein complex binding
GO:0070545 ISS PeBoW complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000012903 wdr12-001 protein_coding Danio_rerio 0 501
ENST00000261015 WDR12-001 protein_coding Homo_sapiens 0 1637
ENST00000463824 WDR12-004 retained_intron Homo_sapiens 0 344
ENST00000464820 WDR12-006 retained_intron Homo_sapiens 0 237
ENST00000467777 WDR12-005 retained_intron Homo_sapiens 0 241
ENST00000475611 WDR12-007 retained_intron Homo_sapiens 0 486
ENST00000477727 WDR12-008 retained_intron Homo_sapiens 0 416
ENST00000478869 WDR12-003 retained_intron Homo_sapiens 0 579
ENST00000513388 RP11-10L12.2-001 processed_pseudogene Homo_sapiens 0 1155
ENST00000561269 RP11-192M23.1-001 processed_pseudogene Homo_sapiens 0 1064

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