C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene 6580
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000117504 Gm6580-001 ENSMUSG00000083169 10090 + 14:46027428-46028784 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartLiverLungMuscleOvaryPlacentaTestisENSMUST00000117504
Transcript ID Adipose Bladder Brain Breast Colon Heart Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000117504 0.040±0.01 0.100±0.02 0.061±0.00 0.048±0.00 0.067±0.03 0.022±0.00 0.105±0.09 0.043±0.01 0.030±0.01 0.052±0.02 0.042±0.01 0.060±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00086A CIL_00086A_0002 VISTA 14:45525150-46127947
CIL_0007SB CIL_0007SB_0002 VISTA 14:45643840-46245127
CIL_0008S4 CIL_0008S4_0002 VISTA 14:45717040-46320810
CIL_0008PK CIL_0008PK_0002 VISTA 14:45923997-46524959
CIL_0008PV CIL_0008PV_0002 VISTA 14:45947450-46549128

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000122335 eif4a1a-201 protein_coding Danio_rerio 0 315
ENSDART00000121698 senp3b-001 protein_coding Danio_rerio 0 315
ENST00000321337 SENP3-001 protein_coding Homo_sapiens 0 1670
ENST00000429205 SENP3-201 protein_coding Homo_sapiens 0 1670
ENST00000580231 SENP3-005 protein_coding Homo_sapiens 0 455
ENST00000580997 SENP3-004 retained_intron Homo_sapiens 0 459
ENST00000581010 SENP3-002 retained_intron Homo_sapiens 5e-23 111
ENST00000581093 SENP3-006 protein_coding Homo_sapiens 2e-22 110
ENST00000582789 SENP3-007 protein_coding Homo_sapiens 7e-22 108
ENST00000583277 SENP3-003 retained_intron Homo_sapiens 9.94922e-44 182
ENST00000610454 SENP3-008 protein_coding Homo_sapiens 0 534
ENST00000614237 SENP3-EIF4A1-001 nonsense_mediated_decay Homo_sapiens 0 1663
ENST00000619785 SENP3-009 nonsense_mediated_decay Homo_sapiens 0 686

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