C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: high mobility group box 1, pseudogene 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000117548 Hmgb1-ps2-001 ENSMUSG00000081738 10090 + X:146175942-146176577 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainLiverMuscleOvaryPlacentaENSMUST00000117548
Transcript ID Bladder Brain Liver Muscle Ovary Placenta
ENSMUST00000117548 0.077±0.01 0.030±0.00 0.143±0.14 0.099±0.05 0.194±0.06 0.065±0.04

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000718 CIL_000718_0002 CGP X:145446425-147197277

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000255320 HMGB1P5-001 transcribed_processed_pseudogene Homo_sapiens 0 848
ENST00000326004 HMGB1-003 protein_coding Homo_sapiens 0 654
ENST00000339872 HMGB1-001 protein_coding Homo_sapiens 0 848
ENST00000341423 HMGB1-004 protein_coding Homo_sapiens 0 848
ENST00000366304 HMGB1P39-001 processed_pseudogene Homo_sapiens 0 481
ENST00000399489 HMGB1-009 protein_coding Homo_sapiens 0 654
ENST00000399494 HMGB1-011 protein_coding Homo_sapiens 0 848
ENST00000405805 HMGB1-012 protein_coding Homo_sapiens 0 848
ENST00000429856 HMGB1P9-001 processed_pseudogene Homo_sapiens 0 691
ENST00000438594 HMGB1P12-001 processed_pseudogene Homo_sapiens 0 470
ENST00000452520 HMGB1P26-001 processed_pseudogene Homo_sapiens 0 599
ENST00000455362 HMGB1P4-001 processed_pseudogene Homo_sapiens 0 647
ENST00000468384 HMGB1-007 processed_transcript Homo_sapiens 0 228
ENST00000490788 HMGB1-008 processed_transcript Homo_sapiens 0 307
ENST00000522557 HMGB1P1-001 processed_pseudogene Homo_sapiens 0 800
ENST00000558211 HMGB1P8-001 processed_pseudogene Homo_sapiens 0 305
ENST00000569046 RP11-673C5.1-001 processed_pseudogene Homo_sapiens 0 806

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