C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene 12218
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000117666 Gm12218-001 ENSMUSG00000082380 10090 - 11:53902757-53903155 processed_pseudogene

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderLiverPlacentaENSMUST00000117666
Transcript ID Bladder Liver Placenta
ENSMUST00000117666 0.073±0.04 0.184±0.11 0.384±0.32

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007RF CIL_0007RF_0002 VISTA 11:53756663-54359415
CIL_00093D CIL_00093D_0002 VISTA 11:53760072-54361368
CIL_0000HR CIL_0000HR_0003 CGP 11:53864542-53980332

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000314138 RPL27A-001 protein_coding Homo_sapiens 0 412
ENST00000358609 RPL27AP-001 processed_pseudogene Homo_sapiens 0 333
ENST00000415679 RP11-226L15.1-001 processed_pseudogene Homo_sapiens 0 268
ENST00000448912 AC104076.2-001 processed_pseudogene Homo_sapiens 0 305
ENST00000469428 RPL27AP5-001 processed_pseudogene Homo_sapiens 0 351
ENST00000492974 RP11-475C16.1-001 processed_pseudogene Homo_sapiens 0 390
ENST00000524496 RPL27A-007 protein_coding Homo_sapiens 0 329
ENST00000525981 RPL27A-010 protein_coding Homo_sapiens 6e-30 134
ENST00000526562 RPL27A-009 protein_coding Homo_sapiens 0 294
ENST00000529227 RPL27A-002 retained_intron Homo_sapiens 6e-18 95
ENST00000530022 RPL27A-008 protein_coding Homo_sapiens 0 409
ENST00000530585 RPL27A-003 retained_intron Homo_sapiens 5e-29 132
ENST00000530913 RPL27A-011 protein_coding Homo_sapiens 0 294
ENST00000531978 RPL27A-004 protein_coding Homo_sapiens 0 285
ENST00000532359 RPL27A-006 protein_coding Homo_sapiens 0 198
ENST00000534599 RPL27A-005 nonsense_mediated_decay Homo_sapiens 0 329

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