C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted pseudogene 7206
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000117730 Gm7206-001 ENSMUSG00000082475 10090 + 14:45713344-45713723 processed_pseudogene

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainLiverMuscleOvaryPlacentaENSMUST00000117730
Transcript ID Adipose Bladder Brain Liver Muscle Ovary Placenta
ENSMUST00000117730 0.201±0.00 14.733±0.00 8.164±0.00 14.654±15.12 0.103±0.00 0.170±0.00 0.058±0.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00086A CIL_00086A_0002 VISTA 14:45525150-46127947
CIL_0007SB CIL_0007SB_0002 VISTA 14:45643840-46245127

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000295955 RPL9-001 protein_coding Homo_sapiens 0 466
ENST00000330965 RPL9P7-001 processed_pseudogene Homo_sapiens 0 466
ENST00000392269 RP11-256K7.1-001 processed_pseudogene Homo_sapiens 0 344
ENST00000393394 RPL9-201 protein_coding Homo_sapiens 0 472
ENST00000418824 UBE2Q2P6-002 processed_transcript Homo_sapiens 0 237
ENST00000420684 AC009500.2-001 processed_pseudogene Homo_sapiens 0 211
ENST00000423843 AC093698.1-001 processed_pseudogene Homo_sapiens 0 361
ENST00000424673 RPL9P2-001 processed_pseudogene Homo_sapiens 0 307
ENST00000437992 RPL9-010 retained_intron Homo_sapiens 0 233
ENST00000449470 RPL9-002 protein_coding Homo_sapiens 0 466
ENST00000461606 RPL9P28-001 processed_pseudogene Homo_sapiens 0 394
ENST00000464118 RPL9P32-001 processed_pseudogene Homo_sapiens 0 420
ENST00000466501 UBE2Q2P6-001 transcribed_processed_pseudogene Homo_sapiens 0 472
ENST00000472460 RP11-851M3.1-001 processed_pseudogene Homo_sapiens 0 327
ENST00000489027 RP11-64K12.1-001 processed_pseudogene Homo_sapiens 0 357
ENST00000489563 RPL9P25-001 processed_pseudogene Homo_sapiens 0 438
ENST00000491923 RPL9P16-001 processed_pseudogene Homo_sapiens 0 320
ENST00000495117 RPL9P31-001 processed_pseudogene Homo_sapiens 0 265
ENST00000503040 RPL9-011 protein_coding Homo_sapiens 0 377
ENST00000503277 RPL9-008 retained_intron Homo_sapiens 0 466
ENST00000504470 RPL9-009 protein_coding Homo_sapiens 0 377
ENST00000506581 RPL9-012 protein_coding Homo_sapiens 0 239
ENST00000508595 RPL9-007 protein_coding Homo_sapiens 0 466
ENST00000511075 RPL9-006 retained_intron Homo_sapiens 0 233
ENST00000511084 CTB-85P21.1-001 processed_pseudogene Homo_sapiens 0 193
ENST00000511643 RPL9-013 retained_intron Homo_sapiens 0 241
ENST00000514842 RPL9-005 retained_intron Homo_sapiens 0 424
ENST00000561773 TIPIN-006 processed_transcript Homo_sapiens 0 438

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