C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene 12957
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000117835 Gm12957-001 ENSMUSG00000084379 10090 + 4:119520990-119521366 processed_pseudogene

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonKidneyLiverLungOvaryPlacentaTestisENSMUST00000117835
Transcript ID Adipose Adrenal Breast Colon Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000117835 0.430±0.27 0.452±0.22 0.256±0.05 0.435±0.00 0.302±0.20 0.075±0.06 0.156±0.00 0.702±0.17 0.332±0.00 0.220±0.08

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008PM CIL_0008PM_0002 VISTA 4:118938785-119540197

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000128030 zgc:112234-204 protein_coding Danio_rerio 0 331
ENSDART00000124016 zgc:112234-205 protein_coding Danio_rerio 0 326
ENSDART00000109316 zgc:112234-202 protein_coding Danio_rerio 0 315
ENSDART00000123136 zgc:112234-203 protein_coding Danio_rerio 0 303
ENSDART00000114942 zgc:171759-204 protein_coding Danio_rerio 0 291
ENSDART00000055913 hist2h2l-001 protein_coding Danio_rerio 0 279
ENST00000222388 ABCF2-003 protein_coding Homo_sapiens 8.00001e-42 176
ENST00000289316 HIST1H2BD-001 protein_coding Homo_sapiens 0 448
ENST00000314332 HIST1H2BC-003 protein_coding Homo_sapiens 0 464
ENST00000339812 HIST1H2BJ-003 protein_coding Homo_sapiens 0 420
ENST00000356950 HIST1H2BK-001 protein_coding Homo_sapiens 0 442
ENST00000369167 HIST2H2BF-001 protein_coding Homo_sapiens 0 420
ENST00000369385 HIST2H2BD-001 processed_pseudogene Homo_sapiens 0 429
ENST00000377401 HIST1H2BL-001 protein_coding Homo_sapiens 0 497
ENST00000377733 HIST1H2BI-001 protein_coding Homo_sapiens 0 459
ENST00000377777 HIST1H2BD-002 protein_coding Homo_sapiens 0 448
ENST00000396980 HIST1H2BN-201 protein_coding Homo_sapiens 0 477
ENST00000396984 HIST1H2BC-002 protein_coding Homo_sapiens 0 464
ENST00000412169 HIST2H2BA-001 transcribed_unprocessed_pseudogene Homo_sapiens 0 392
ENST00000419683 HIST1H2BPS3-001 processed_pseudogene Homo_sapiens 0 278
ENST00000430394 HIST2H2BA-002 processed_transcript Homo_sapiens 0 388
ENST00000449108 HIST2H2BB-001 transcribed_unprocessed_pseudogene Homo_sapiens 0 403
ENST00000449538 HIST1H2BN-002 nonsense_mediated_decay Homo_sapiens 0 484
ENST00000464664 CH507-42P11.1-001 processed_pseudogene Homo_sapiens 0 429
ENST00000465850 RP11-274J15.2-001 processed_pseudogene Homo_sapiens 0 385
ENST00000469483 HIST2H2BF-002 processed_transcript Homo_sapiens 0 416
ENST00000498492 HIST2H2BC-001 processed_pseudogene Homo_sapiens 0 431
ENST00000541790 HIST1H2BG-001 protein_coding Homo_sapiens 0 375
ENST00000545683 HIST2H2BF-201 protein_coding Homo_sapiens 0 420
ENST00000599962 H2BFS-001 protein_coding Homo_sapiens 0 431
ENST00000606613 HIST1H2BN-003 protein_coding Homo_sapiens 0 479
ENST00000607124 HIST1H2BJ-001 protein_coding Homo_sapiens 0 420
ENST00000609585 HIST2H2BB-002 processed_transcript Homo_sapiens 0 403
ENST00000612898 HIST1H2BN-001 protein_coding Homo_sapiens 0 484
ENST00000614097 HIST1H2BE-001 protein_coding Homo_sapiens 0 464
ENST00000615966 HIST1H2BB-001 protein_coding Homo_sapiens 0 366

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