C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tetratricopeptide repeat domain 14
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000117915 Ttc14-005 ENSMUSG00000027677 10090 + 3:33800213-33812291 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastColonHeartKidneyLiverLungMuscleOvaryENSMUST00000117915
Transcript ID Adipose Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary
ENSMUST00000117915 2.022±0.73 3.282±0.00 2.045±0.29 1.547±0.09 0.642±0.01 0.904±0.15 1.127±0.34 2.455±0.00 0.763±0.24 2.114±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001FH CIL_0001FH_0002 CGP 3:32949408-33814860
CIL_00081N CIL_00081N_0002 VISTA 3:33582396-34183856
CIL_00081O CIL_00081O_0002 VISTA 3:33605209-34206178
CIL_0001FQ CIL_0001FQ_0002 CGP 3:33799955-33844310

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003723 IEA RNA binding
GO:0005515 IPI protein binding
GO:0005575 ND cellular_component
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000296015 TTC14-001 protein_coding Homo_sapiens 0 2647
ENST00000382584 TTC14-005 protein_coding Homo_sapiens 0 2191
ENST00000412756 TTC14-002 protein_coding Homo_sapiens 0 1637
ENST00000420179 RP5-1049N15.2-001 processed_pseudogene Homo_sapiens 0 364
ENST00000442201 CCDC39-001 protein_coding Homo_sapiens 0 204
ENST00000462895 TTC14-007 nonsense_mediated_decay Homo_sapiens 0 619
ENST00000465065 TTC14-003 nonsense_mediated_decay Homo_sapiens 0 821
ENST00000465625 TTC14-010 processed_transcript Homo_sapiens 0 693
ENST00000470669 TTC14-004 nonsense_mediated_decay Homo_sapiens 0 1637
ENST00000476379 CCDC39-002 nonsense_mediated_decay Homo_sapiens 3e-29 135
ENST00000489868 CCDC39-007 protein_coding Homo_sapiens 0 198
ENST00000491380 TTC14-006 protein_coding Homo_sapiens 0 481
ENST00000492617 TTC14-008 protein_coding Homo_sapiens 0 935
ENST00000495660 TTC14-009 protein_coding Homo_sapiens 0 699

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