C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: transcription elongation factor A (SII) 1, pseudogene 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000117942 Tcea1-ps1-001 ENSMUSG00000067869 10090 + 15:90882615-90883518 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000117942
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000117942 0.063±0.01 0.105±0.08 0.589±0.73 0.352±0.00 0.326±0.14 0.048±0.00 0.101±0.06 0.168±0.12 0.160±0.02 0.062±0.03 0.045±0.02 0.063±0.05 0.560±0.67

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006HL CIL_0006HL_0002 CGP 15:90487482-91049948

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000396401 TCEA1-013 protein_coding Homo_sapiens 0 1123
ENST00000420496 TCEA1P2-001 processed_pseudogene Homo_sapiens 0 1271
ENST00000443005 TCEA1P3-001 processed_pseudogene Homo_sapiens 0 717
ENST00000449716 TCEA1P1-001 processed_pseudogene Homo_sapiens 0 761
ENST00000517351 TCEA1-004 processed_transcript Homo_sapiens 0 283
ENST00000518310 TCEA1-009 nonsense_mediated_decay Homo_sapiens 0 248
ENST00000518784 TCEA1-010 protein_coding Homo_sapiens 0 296
ENST00000520534 TCEA1-011 protein_coding Homo_sapiens 0 405
ENST00000521086 TCEA1-001 processed_transcript Homo_sapiens 0 1002
ENST00000521604 TCEA1-002 protein_coding Homo_sapiens 0 1282
ENST00000521836 TCEA1-005 processed_transcript Homo_sapiens 0 278
ENST00000522397 TCEA1-006 processed_transcript Homo_sapiens 0 592
ENST00000522635 TCEA1-003 protein_coding Homo_sapiens 0 366

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