C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: TATA box binding protein
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000118001 Tbp-002 ENSMUSG00000014767 10090 + 17:15499910-15517427 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000118001
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000118001 4.081±1.93 10.292±2.15 6.756±0.33 8.088±1.44 5.637±0.42 7.864±1.17 2.121±0.89 6.776±0.77 7.577±3.19 8.026±0.43 0.975±0.00 9.342±1.88 7.297±2.68 18.047±1.68

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008DG CIL_0008DG_0002 VISTA 17:15140120-15741360
CIL_00018G CIL_00018G_0002 CGP 17:15475721-15528379
CIL_00018F CIL_00018F_0002 CGP 17:15499888-15528379

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000120 TAS RNA polymerase I transcription factor complex
GO:0001103 IPI RNA polymerase II repressing transcription factor binding
GO:0001939 IDA female pronucleus
GO:0001940 IDA male pronucleus
GO:0003677 IDA DNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005669 ISO transcription factor TFIID complex
GO:0005737 IDA cytoplasm
GO:0006352 IEA DNA-templated transcription, initiation
GO:0006366 IMP transcription from RNA polymerase II promoter
GO:0006383 IMP transcription from RNA polymerase III promoter
GO:0045120 IDA pronucleus

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000016211 tbp-001 protein_coding Danio_rerio 4.06377e-44 183
ENST00000230354 TBP-001 protein_coding Homo_sapiens 0 453
ENST00000392092 TBP-201 protein_coding Homo_sapiens 0 453
ENST00000421512 TBP-004 protein_coding Homo_sapiens 0 387
ENST00000446829 TBP-002 protein_coding Homo_sapiens 0 372
ENST00000540980 TBP-202 protein_coding Homo_sapiens 0 453
ENST00000616883 TBP-203 protein_coding Homo_sapiens 0 403

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