C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: zinc finger, CCHC domain containing 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000118196 Zcchc2-001 ENSMUSG00000038866 10090 + 1:105990406-106034074 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000118196
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000118196 2.980±0.93 2.392±0.62 3.886±0.62 4.145±1.90 2.084±0.42 0.371±0.00 2.097±0.76 2.540±0.77 1.558±0.26 0.731±0.33 3.367±1.21 3.502±2.28 11.118±4.05

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00076G CIL_00076G_0002 CGP 1:105780718-106034074
CIL_00076H CIL_00076H_0002 CGP 1:105990406-106394250

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0003676 IEA nucleic acid binding
GO:0005737 IEA cytoplasm
GO:0008150 ND biological_process
GO:0008270 IEA zinc ion binding
GO:0035091 IEA phosphatidylinositol binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000269499 ZCCHC2-005 protein_coding Homo_sapiens 0 4636
ENST00000433830 AC073987.2-001 processed_pseudogene Homo_sapiens 0 250
ENST00000585873 ZCCHC2-001 nonsense_mediated_decay Homo_sapiens 0 3967
ENST00000585949 ZCCHC2-007 retained_intron Homo_sapiens 0 2597
ENST00000586834 ZCCHC2-004 protein_coding Homo_sapiens 0 3398
ENST00000587612 ZCCHC2-009 processed_transcript Homo_sapiens 0 324
ENST00000588676 ZCCHC2-006 protein_coding Homo_sapiens 0 856
ENST00000591145 ZCCHC2-010 nonsense_mediated_decay Homo_sapiens 0 671
ENST00000591435 ZCCHC2-008 retained_intron Homo_sapiens 0 372
ENST00000591632 ZCCHC2-002 processed_transcript Homo_sapiens 0 403
ENST00000621048 ZCCHC2-012 protein_coding Homo_sapiens 0 713

Loading