C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene 8145
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000118220 Gm8145-001 ENSMUSG00000084218 10090 + 5:107241623-107242367 processed_pseudogene

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBreastColonHeartKidneyLiverLungMuscleOvaryTestisENSMUST00000118220
Transcript ID Adrenal Breast Colon Heart Kidney Liver Lung Muscle Ovary Testis
ENSMUST00000118220 0.298±0.09 0.847±0.32 0.144±0.00 0.182±0.07 0.180±0.06 0.092±0.07 0.522±0.07 0.055±0.00 0.887±0.50 0.128±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008DI CIL_0008DI_0002 VISTA 5:106921760-107524214
CIL_0008YV CIL_0008YV_0002 VISTA 5:106950899-107552442
CIL_00069I CIL_00069I_0002 CGP 5:106964322-107289629
CIL_0005ZR CIL_0005ZR_0002 CGP 5:107106570-107387058

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000315377 RPS6-003 protein_coding Homo_sapiens 0 697
ENST00000380381 RPS6-004 protein_coding Homo_sapiens 1e-36 158
ENST00000380384 RPS6-002 protein_coding Homo_sapiens 0 697
ENST00000380394 RPS6-001 protein_coding Homo_sapiens 0 704
ENST00000393214 AC004386.4-001 processed_pseudogene Homo_sapiens 0 339
ENST00000397390 RP11-146N23.1-001 processed_pseudogene Homo_sapiens 0 361
ENST00000422735 RP11-229M1.2-001 processed_pseudogene Homo_sapiens 0 558
ENST00000463969 RP11-864G5.1-001 processed_pseudogene Homo_sapiens 0 514
ENST00000464444 AD000092.3-001 processed_pseudogene Homo_sapiens 0 558
ENST00000471756 RP11-791G16.2-001 transcribed_processed_pseudogene Homo_sapiens 0 309
ENST00000472008 RP11-399D15.1-001 processed_pseudogene Homo_sapiens 0 298
ENST00000475592 RP11-392P7.1-001 processed_pseudogene Homo_sapiens 0 569
ENST00000479691 RPS6P16-001 processed_pseudogene Homo_sapiens 0 473
ENST00000481577 RP11-771F20.1-001 processed_pseudogene Homo_sapiens 0 588
ENST00000488045 RP11-791G16.2-002 processed_transcript Homo_sapiens 0 309
ENST00000498815 RPS6-005 processed_transcript Homo_sapiens 0 257
ENST00000572071 RP11-399D15.1-001 processed_pseudogene Homo_sapiens 0 298

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