C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: replication initiator 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000118229 Repin1-001 ENSMUSG00000052751 10090 + 6:48593891-48599082 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000118229
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000118229 6.624±1.46 12.970±5.57 10.003±0.96 3.983±2.02 5.145±1.60 5.789±2.58 4.126±0.54 7.832±2.58 8.824±6.73 5.372±1.15 2.742±1.09 17.716±7.61 1.198±0.64 2.061±1.15

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004OE CIL_0004OE_0002 CGP 6:48593883-48623227

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0005634 IEA nucleus
GO:0005811 IDA lipid particle
GO:0005829 IDA cytosol
GO:0006260 IEA DNA replication
GO:0022626 IDA cytosolic ribosome
GO:0031965 IDA nuclear membrane
GO:0044822 IEA poly(A) RNA binding
GO:0046872 IEA metal ion binding
GO:2000191 IMP regulation of fatty acid transport
GO:2001273 IMP regulation of glucose import in response to insulin stimulus

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000247930 ZNF777-001 protein_coding Homo_sapiens 0.00000003 66
ENST00000397281 REPIN1-201 protein_coding Homo_sapiens 0 893
ENST00000425389 REPIN1-018 protein_coding Homo_sapiens 0 894
ENST00000444957 REPIN1-202 protein_coding Homo_sapiens 0 894
ENST00000466559 REPIN1-004 protein_coding Homo_sapiens 0 778
ENST00000467980 REPIN1-009 nonsense_mediated_decay Homo_sapiens 0 195
ENST00000469309 REPIN1-008 retained_intron Homo_sapiens 0 195
ENST00000473391 REPIN1-005 retained_intron Homo_sapiens 0 309
ENST00000475514 REPIN1-011 protein_coding Homo_sapiens 0 941
ENST00000478789 ZNF775-002 protein_coding Homo_sapiens 2e-32 143
ENST00000479668 REPIN1-001 protein_coding Homo_sapiens 0 893
ENST00000482680 REPIN1-006 protein_coding Homo_sapiens 0 497
ENST00000486714 REPIN1-013 nonsense_mediated_decay Homo_sapiens 0 198
ENST00000487455 REPIN1-003 retained_intron Homo_sapiens 0 198
ENST00000488943 REPIN1-012 protein_coding Homo_sapiens 0 990
ENST00000489432 REPIN1-002 protein_coding Homo_sapiens 0 1219
ENST00000495535 REPIN1-007 retained_intron Homo_sapiens 0 195
ENST00000522266 REPIN1-017 nonsense_mediated_decay Homo_sapiens 0 309

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