C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene 13835
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000118459 Gm13835-001 ENSMUSG00000086922 10090 - 6:31141979-31142663 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000118459
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000118459 3.400±1.00 6.754±1.33 5.126±0.00 5.547±1.66 4.336±1.57 2.427±1.11 3.462±0.28 5.097±0.91 9.126±3.40 2.959±0.20 1.889±0.33 4.738±2.49 0.439±0.48 4.005±0.90

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002GU CIL_0002GU_0002 CGP 6:30956023-31516811

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000130105 psma3-001 protein_coding Danio_rerio 0 416
ENST00000216455 PSMA3-001 protein_coding Homo_sapiens 0 929
ENST00000412908 PSMA3-002 protein_coding Homo_sapiens 0 804
ENST00000424879 RP4-580O19.2-001 processed_pseudogene Homo_sapiens 0 553
ENST00000553665 PSMA3-008 retained_intron Homo_sapiens 0 424
ENST00000553677 PSMA3-007 protein_coding Homo_sapiens 0 268
ENST00000554812 PSMA3-006 retained_intron Homo_sapiens 0 654
ENST00000555743 PSMA3-016 retained_intron Homo_sapiens 0 662
ENST00000555931 PSMA3-011 nonsense_mediated_decay Homo_sapiens 0 558
ENST00000556321 PSMA3-015 retained_intron Homo_sapiens 0 302
ENST00000557087 PSMA3-012 nonsense_mediated_decay Homo_sapiens 0 678
ENST00000557290 PSMA3-004 retained_intron Homo_sapiens 0 268
ENST00000557508 PSMA3-013 protein_coding Homo_sapiens 0 961

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