C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cystathionine beta-synthase
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000118504 Cbs-003 ENSMUSG00000024039 10090 - 17:31612640-31637165 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000118504
Transcript ID Adipose Adrenal Bladder Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000118504 0.739±0.00 0.119±0.00 0.089±0.00 0.558±0.00 5.131±1.31 0.145±0.00 6.275±0.62 21.914±20.33 0.457±0.00 0.040±0.01 10.649±0.47 0.097±0.03 0.481±0.38

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008QJ CIL_0008QJ_0002 VISTA 17:31053737-31653776
CIL_0000D3 CIL_0000D3_0002 CGP 17:31564749-31637199
CIL_0000MQ CIL_0000MQ_0004 CGP 17:31612623-31658754

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001958 IMP endochondral ossification
GO:0001974 IMP blood vessel remodeling
GO:0004122 IMP cystathionine beta-synthase activity
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0006535 IEA cysteine biosynthetic process from serine
GO:0006801 IMP superoxide metabolic process
GO:0019343 IEA cysteine biosynthetic process via cystathionine
GO:0019344 IMP cysteine biosynthetic process
GO:0021587 IMP cerebellum morphogenesis
GO:0030554 IEA adenyl nucleotide binding
GO:0030823 IMP regulation of cGMP metabolic process
GO:0043506 IMP regulation of JUN kinase activity
GO:0046872 IEA metal ion binding
GO:0050667 IMP homocysteine metabolic process
GO:0050880 IMP regulation of blood vessel size
GO:0051593 IMP response to folic acid
GO:0060135 IMP maternal process involved in female pregnancy
GO:0060351 IMP cartilage development involved in endochondral bone morphogenesis
GO:0070814 ISS hydrogen sulfide biosynthetic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000352178 CBS-001 protein_coding Homo_sapiens 0 1495
ENST00000359624 CBS-002 protein_coding Homo_sapiens 0 1495
ENST00000398158 CBS-004 protein_coding Homo_sapiens 0 1495
ENST00000398165 CBS-003 protein_coding Homo_sapiens 0 1495
ENST00000398168 CBS-001 protein_coding Homo_sapiens 0 1489
ENST00000430013 CBS-014 protein_coding Homo_sapiens 0 492
ENST00000441030 CBS-007 protein_coding Homo_sapiens 0 370
ENST00000451248 CBS-016 protein_coding Homo_sapiens 0 307
ENST00000458223 CBS-015 protein_coding Homo_sapiens 0 324
ENST00000461686 CBS-005 retained_intron Homo_sapiens 0 1354
ENST00000462349 CBS-013 retained_intron Homo_sapiens 0 462
ENST00000465732 CBS-009 processed_transcript Homo_sapiens 9e-32 141
ENST00000470912 CBS-008 processed_transcript Homo_sapiens 1e-31 141
ENST00000488526 CBS-010 processed_transcript Homo_sapiens 9e-32 141
ENST00000491776 CBS-006 retained_intron Homo_sapiens 0 483
ENST00000617706 CBS-201 protein_coding Homo_sapiens 0 1489
ENST00000618024 CBS-002 protein_coding Homo_sapiens 0 1489
ENST00000623939 CBS-007 processed_transcript Homo_sapiens 0 564
ENST00000624406 CBS-009 protein_coding Homo_sapiens 0 1489
ENST00000624691 CBS-006 retained_intron Homo_sapiens 0 1349
ENST00000624808 CBS-003 processed_transcript Homo_sapiens 0 324
ENST00000624921 CBS-008 processed_transcript Homo_sapiens 1e-31 141
ENST00000624934 CBS-004 protein_coding Homo_sapiens 0 1419

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