C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tropomyosin 3, gamma
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000118566 Tpm3-004 ENSMUSG00000027940 10090 + 3:90079654-90100896 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastHeartLiverLungMuscleOvaryPlacentaENSMUST00000118566
Transcript ID Adipose Adrenal Breast Heart Liver Lung Muscle Ovary Placenta
ENSMUST00000118566 6.628±1.14 9.783±0.24 10.751±3.22 2.515±0.00 7.732±3.06 20.928±1.18 3.004±0.00 8.992±0.68 20.848±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001725 ISO stress fiber
GO:0002102 IDA podosome
GO:0005515 IPI protein binding
GO:0005737 IDA cytoplasm
GO:0030426 IDA growth cone
GO:0030863 IDA cortical cytoskeleton
GO:0031941 IDA filamentous actin
GO:0032154 IDA cleavage furrow
GO:0043005 IDA neuron projection

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000054763 tpma-202 protein_coding Danio_rerio 0 529
ENSDART00000039657 tpma-201 protein_coding Danio_rerio 0 529
ENSDART00000009054 tpm4a-201 protein_coding Danio_rerio 0 411
ENSDART00000138978 tpm4a-002 protein_coding Danio_rerio 0 411
ENSDART00000123125 tpm4a-203 protein_coding Danio_rerio 0 375
ENSDART00000036075 tpm4a-202 protein_coding Danio_rerio 0 355
ENSDART00000142717 tpm4a-001 protein_coding Danio_rerio 0 355
ENST00000271850 TPM3-015 protein_coding Homo_sapiens 0 647
ENST00000302206 TPM3-011 protein_coding Homo_sapiens 0 815
ENST00000312970 TPM3-022 processed_transcript Homo_sapiens 0 547
ENST00000323144 TPM3-010 protein_coding Homo_sapiens 0 1005
ENST00000328159 TPM3-006 protein_coding Homo_sapiens 0 1262
ENST00000330188 TPM3-009 protein_coding Homo_sapiens 0 1042
ENST00000330554 TPM3P8-001 processed_pseudogene Homo_sapiens 0 630
ENST00000338274 TPM3P7-001 processed_pseudogene Homo_sapiens 0 568
ENST00000341372 TPM3-005 protein_coding Homo_sapiens 0 555
ENST00000341485 TPM3-003 protein_coding Homo_sapiens 0 425
ENST00000368527 TPM3-019 processed_transcript Homo_sapiens 0 466
ENST00000368530 TPM3-001 protein_coding Homo_sapiens 0 953
ENST00000368531 TPM3-026 protein_coding Homo_sapiens 0 830
ENST00000368533 TPM3-004 protein_coding Homo_sapiens 0 854
ENST00000368545 TPM3-014 retained_intron Homo_sapiens 0 311
ENST00000391998 TPM3P6-001 processed_pseudogene Homo_sapiens 0 625
ENST00000413233 TPM3P1-001 processed_pseudogene Homo_sapiens 0 619
ENST00000424846 TPM3P9-002 processed_transcript Homo_sapiens 0 669
ENST00000425942 TPM3P4-001 processed_pseudogene Homo_sapiens 0 564
ENST00000469717 TPM3-008 processed_transcript Homo_sapiens 0 311
ENST00000473036 TPM3-021 retained_intron Homo_sapiens 0 675
ENST00000492121 TPM3P9-001 transcribed_processed_pseudogene Homo_sapiens 0 651
ENST00000504663 TPM3-025 retained_intron Homo_sapiens 1.4013e-45 187
ENST00000505010 TPM3-023 retained_intron Homo_sapiens 0 459
ENST00000509409 TPM3-016 nonsense_mediated_decay Homo_sapiens 0 470
ENST00000509601 TPM3-020 nonsense_mediated_decay Homo_sapiens 0 414
ENST00000513769 TPM3-024 retained_intron Homo_sapiens 0 215
ENST00000561804 RP11-618N24.1-001 processed_pseudogene Homo_sapiens 0 660
ENST00000567701 RP11-297L17.6-001 processed_pseudogene Homo_sapiens 0 747
ENST00000599541 AC243960.2-201 protein_coding Homo_sapiens 0 425
ENST00000600996 AC005795.1-001 processed_pseudogene Homo_sapiens 0 750
ENST00000611659 TPM3-201 protein_coding Homo_sapiens 0 693

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