C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene 12565
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000119004 Gm12565-001 ENSMUSG00000081093 10090 - 3:37599424-37600072 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainLiverOvaryPlacentaTestisENSMUST00000119004
Transcript ID Bladder Brain Liver Ovary Placenta Testis
ENSMUST00000119004 0.015±0.00 0.014±0.00 0.015±0.01 0.101±0.00 0.098±0.05 0.081±0.03

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007V2 CIL_0007V2_0002 VISTA 3:37371698-37974083
CIL_0007AG CIL_0007AG_0002 CGP 3:37419896-37644598
CIL_00099R CIL_00099R_0002 VISTA 3:37594700-38198826

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000303204 PRELID1-001 protein_coding Homo_sapiens 0 828
ENST00000403549 PRELID1P1-001 transcribed_processed_pseudogene Homo_sapiens 0 809
ENST00000427908 MXD3-003 protein_coding Homo_sapiens 4.00001e-40 171
ENST00000431591 RP11-543B16.2-001 processed_pseudogene Homo_sapiens 0 811
ENST00000436998 AC016734.2-001 processed_pseudogene Homo_sapiens 0 793
ENST00000450055 PRELID1P3-001 processed_pseudogene Homo_sapiens 0 649
ENST00000502670 PRELID1-004 processed_transcript Homo_sapiens 0 294
ENST00000503216 PRELID1-002 protein_coding Homo_sapiens 0 662
ENST00000503853 PRELID1-006 protein_coding Homo_sapiens 0 477
ENST00000504594 PRELID1-005 nonsense_mediated_decay Homo_sapiens 0 422
ENST00000510701 PRELID1-008 retained_intron Homo_sapiens 0 230
ENST00000510797 PRELID1-003 nonsense_mediated_decay Homo_sapiens 0 514
ENST00000511309 PRELID1-007 retained_intron Homo_sapiens 0 568
ENST00000561466 PRELID1P4-001 processed_pseudogene Homo_sapiens 0 551
ENST00000567272 PRELID1P1-002 processed_transcript Homo_sapiens 0 809

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