C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene 12988
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000119054 Gm12988-001 ENSMUSG00000082743 10090 - 4:135756218-135756695 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; ColonKidneyLiverLungPlacentaTestisENSMUST00000119054
Transcript ID Colon Kidney Liver Lung Placenta Testis
ENSMUST00000119054 0.316±0.00 0.303±0.01 0.046±0.02 0.299±0.00 0.103±0.00 0.081±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00020E CIL_00020E_0002 CGP 4:135728172-135815564

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000328392 SKP1-008 protein_coding Homo_sapiens 0 531
ENST00000353411 SKP1-001 protein_coding Homo_sapiens 0 575
ENST00000429280 SKP1P3-001 processed_pseudogene Homo_sapiens 0 298
ENST00000438081 SKP1P1-001 processed_pseudogene Homo_sapiens 0 536
ENST00000444513 RP11-1018J11.1-001 processed_pseudogene Homo_sapiens 0 425
ENST00000454105 RP11-302K17.4-001 processed_pseudogene Homo_sapiens 1e-16 88
ENST00000506122 RP11-241J12.3-001 processed_pseudogene Homo_sapiens 0 348
ENST00000506450 RP11-302F12.2-001 processed_pseudogene Homo_sapiens 0 320
ENST00000517625 SKP1-004 protein_coding Homo_sapiens 0 575
ENST00000517691 SKP1-013 retained_intron Homo_sapiens 0 424
ENST00000519054 SKP1-011 nonsense_mediated_decay Homo_sapiens 0 424
ENST00000519321 SKP1-003 protein_coding Homo_sapiens 0 483
ENST00000519718 CTD-2410N18.5-001 protein_coding Homo_sapiens 4e-29 132
ENST00000520417 SKP1-006 protein_coding Homo_sapiens 0 309
ENST00000521216 SKP1-009 protein_coding Homo_sapiens 0 492
ENST00000522552 SKP1-002 protein_coding Homo_sapiens 0 536
ENST00000522855 SKP1-005 protein_coding Homo_sapiens 0 575
ENST00000523359 SKP1-007 protein_coding Homo_sapiens 0.0000000001 71
ENST00000523966 SKP1-010 nonsense_mediated_decay Homo_sapiens 0 508
ENST00000524288 SKP1-012 retained_intron Homo_sapiens 1e-20 104
ENST00000610519 RP11-1082I11.2-001 processed_pseudogene Homo_sapiens 0 303

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