C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: repulsive guidance molecule family member A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000119206 Rgma-002 ENSMUSG00000070509 10090 + 7:73375520-73419899 protein_coding

Mus musculus EnsemblGRCm38

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Numeric Values
Transcript'; LiverPlacentaTestisENSMUST00000119206
Transcript ID Liver Placenta Testis
ENSMUST00000119206 0.016±0.00 0.812±0.00 0.354±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006GY CIL_0006GY_0002 CGP 7:73375520-73541746

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001843 IMP neural tube closure
GO:0001934 ISO positive regulation of protein phosphorylation
GO:0005515 IPI protein binding
GO:0009986 IDA cell surface
GO:0015026 IGI coreceptor activity
GO:0030509 IGI BMP signaling pathway
GO:0030510 IDA regulation of BMP signaling pathway

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000329082 RGMA-001 protein_coding Homo_sapiens 0 1365
ENST00000425933 RGMA-201 protein_coding Homo_sapiens 0 1365
ENST00000542321 RGMA-007 protein_coding Homo_sapiens 0 1365
ENST00000543599 RGMA-202 protein_coding Homo_sapiens 0 1365
ENST00000554387 RGMA-005 nonsense_mediated_decay Homo_sapiens 0 1362
ENST00000555584 RGMA-012 processed_transcript Homo_sapiens 0 316
ENST00000555598 RGMA-009 protein_coding Homo_sapiens 0 243
ENST00000556658 RGMA-006 protein_coding Homo_sapiens 0 1365
ENST00000557301 RGMA-004 protein_coding Homo_sapiens 0 1365
ENST00000557420 RGMA-010 protein_coding Homo_sapiens 0 712

Loading