C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene 5466
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000119395 Gm5466-001 ENSMUSG00000083397 10090 + 2:181896823-181898712 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000119395
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000119395 0.054±0.03 0.110±0.02 0.038±0.00 0.920±0.00 0.146±0.07 0.139±0.10 0.039±0.02 0.040±0.02 0.059±0.03 0.141±0.04 0.045±0.02 0.265±0.17 0.160±0.14 0.277±0.13

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000372856 PABPC4-004 protein_coding Homo_sapiens 0 1186
ENST00000372857 PABPC4-001 protein_coding Homo_sapiens 0 1430
ENST00000372858 PABPC4-002 protein_coding Homo_sapiens 0 1186
ENST00000372862 PABPC4-003 protein_coding Homo_sapiens 0 1186
ENST00000414338 RP11-393N21.1-001 processed_pseudogene Homo_sapiens 5e-37 158
ENST00000421687 PABPC4-017 protein_coding Homo_sapiens 0 1186
ENST00000437136 PABPC4-013 protein_coding Homo_sapiens 0 274
ENST00000451091 PABPC4-011 protein_coding Homo_sapiens 0 433
ENST00000461578 PABPC4-014 retained_intron Homo_sapiens 0 230
ENST00000468476 PABPC4-006 retained_intron Homo_sapiens 6e-35 154
ENST00000470443 PABPC4-007 nonsense_mediated_decay Homo_sapiens 0 845
ENST00000474378 PABPC4-008 protein_coding Homo_sapiens 0 558
ENST00000477556 PABPC4-009 retained_intron Homo_sapiens 7e-36 154
ENST00000482028 PABPC4-012 retained_intron Homo_sapiens 2e-32 143
ENST00000483770 PABPC4-016 retained_intron Homo_sapiens 0 326
ENST00000484555 PABPC4-015 retained_intron Homo_sapiens 0 202
ENST00000492468 PABPC4-005 retained_intron Homo_sapiens 0 322
ENST00000492519 PABPC4-010 retained_intron Homo_sapiens 0 313
ENST00000525045 PABPC4-023 retained_intron Homo_sapiens 0 514
ENST00000525669 PABPC4-022 retained_intron Homo_sapiens 0 446
ENST00000525751 PABPC4-019 retained_intron Homo_sapiens 0 440
ENST00000527718 PABPC4-021 protein_coding Homo_sapiens 0 562
ENST00000529216 PABPC4-025 processed_transcript Homo_sapiens 0 202
ENST00000530186 PABPC4-024 protein_coding Homo_sapiens 0 289
ENST00000549280 RP11-813P10.2-001 processed_pseudogene Homo_sapiens 0 298
ENST00000555663 CTD-2643K12.1-001 processed_pseudogene Homo_sapiens 0 298

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